Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G221500.1 | Wheat | cytosol | 86.81 | 83.89 |
| TraesCS1D01G211100.1 | Wheat | cytosol | 85.76 | 80.98 |
| HORVU1Hr1G053230.7 | Barley | cytosol | 54.86 | 66.39 |
| TraesCS1A01G207900.1 | Wheat | cytosol | 65.28 | 44.87 |
| Os10t0552400-01 | Rice | cytosol | 58.33 | 38.98 |
| Bra007601.1-P | Field mustard | cytosol | 19.44 | 31.46 |
| Zm00001d029847_P001 | Maize | cytosol | 55.56 | 31.37 |
| OQU92181 | Sorghum | endoplasmic reticulum | 58.33 | 29.12 |
| Bra014438.1-P | Field mustard | cytosol | 23.96 | 24.82 |
| CDX89114 | Canola | cytosol | 24.31 | 24.56 |
| CDY37075 | Canola | cytosol | 22.57 | 24.44 |
| Bra039304.1-P | Field mustard | cytosol | 22.57 | 24.44 |
| CDY27349 | Canola | cytosol | 21.88 | 23.68 |
| Bra004948.1-P | Field mustard | cytosol | 23.26 | 23.59 |
| CDX74775 | Canola | cytosol | 22.92 | 23.24 |
| CDY18888 | Canola | nucleus | 22.92 | 23.16 |
| CDY42502 | Canola | cytosol | 21.53 | 22.71 |
| CDY48922 | Canola | cytosol | 22.92 | 22.68 |
| CDX71740 | Canola | cytosol | 20.49 | 21.77 |
| CDX95679 | Canola | cytosol, extracellular, plastid | 9.72 | 21.71 |
| CDX71741 | Canola | nucleus | 27.08 | 19.31 |
| AT3G61410.3 | Thale cress | cytosol | 21.18 | 18.48 |
| Bra003448.1-P | Field mustard | nucleus | 27.08 | 18.4 |
| AT1G01680.1 | Thale cress | cytosol | 19.44 | 18.18 |
| Bra014439.1-P | Field mustard | cytosol | 21.53 | 18.18 |
| CDX89113 | Canola | cytosol | 21.53 | 18.18 |
| CDY42501 | Canola | cytosol | 20.83 | 17.6 |
| CDY48923 | Canola | cytosol | 26.39 | 17.35 |
| Bra007600.1-P | Field mustard | cytosol | 26.39 | 17.35 |
| CDY51567 | Canola | nucleus | 24.31 | 17.16 |
| CDX90051 | Canola | cytosol | 18.06 | 16.94 |
| AT3G61390.2 | Thale cress | cytosol | 25.35 | 16.78 |
| AT2G45920.1 | Thale cress | cytosol | 23.26 | 16.75 |
| CDY15161 | Canola | cytosol | 17.71 | 16.67 |
| Bra033242.1-P | Field mustard | nucleus | 14.24 | 15.71 |
| Bra000412.1-P | Field mustard | cytosol | 15.28 | 15.55 |
| CDX83380 | Canola | cytosol | 15.28 | 15.55 |
| Bra033243.1-P | Field mustard | cytosol, plastid | 26.74 | 14.92 |
| AT1G01670.1 | Thale cress | nucleus | 17.71 | 13.97 |
| AT1G01660.2 | Thale cress | nucleus | 27.43 | 13.88 |
| Bra033244.1-P | Field mustard | cytosol | 25.35 | 13.67 |
| CDX90050 | Canola | nucleus | 26.39 | 13.36 |
| CDY15162 | Canola | nucleus | 25.0 | 12.68 |
| Bra010318.1-P | Field mustard | cytosol | 22.22 | 11.62 |
| VIT_00s0772g00010.t01 | Wine grape | cytosol | 22.57 | 9.94 |
| KRH74477 | Soybean | cytosol | 23.26 | 8.36 |
| KRH39466 | Soybean | cytosol | 22.92 | 8.25 |
| KRG99475 | Soybean | cytosol | 21.53 | 7.77 |
| AT5G65500.2 | Thale cress | cytosol | 21.53 | 7.76 |
| Bra037819.1-P | Field mustard | cytosol | 20.83 | 7.52 |
| Bra024393.1-P | Field mustard | cytosol | 20.83 | 7.52 |
| CDY54713 | Canola | cytosol | 20.83 | 7.52 |
| CDY14575 | Canola | cytosol | 20.83 | 7.52 |
| CDX81289 | Canola | cytosol | 20.83 | 7.51 |
| CDY67215 | Canola | cytosol | 20.49 | 7.39 |
| Solyc11g010700.1.1 | Tomato | cytosol | 17.01 | 6.14 |
| PGSC0003DMT400041610 | Potato | cytosol | 4.17 | 2.3 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G207800.1 | EnsemblPlantsGene:TraesCS1A01G207800 | Gene3D:3.40.50.620 | InterPro:IPR014729 | InterPro:Rossmann-like_a/b/a_fold | ncoils:Coil |
| PANTHER:PTHR27003 | PANTHER:PTHR27003:SF1 | SEG:seg | SUPFAM:SSF52402 | TIGR:cd01989 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1A:+:369517700..369521309
Molecular Weight (calculated)
32482.1 Da
IEP (calculated)
6.359
GRAVY (calculated)
-0.481
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAAAAEEK VFVAVPAEPR AGQSTLAWAL RHLYGGAGTT IVVTHVHVPP QMIPIMGVKF HADKLSPEPV RAFRRAERER AHEMLDDYIH QCSQIKVKCE
101: KLVIEQEDAA SGLVELIRLR RITKLVIAAA EDKHYSKKLD KPVSKTATEI MERADPSCKI WFVCKEQLVC TRSKEVQIAP LTVAAPLLPS PGHEAQHLQS
201: PQEEGDTEME PSFDDELEEA RKAVGELMRR ALKESCRRQK AEEEMATSLQ KAQEHEQLYL EEVKKREELE AALARADREI ARLRQAIQ
101: KLVIEQEDAA SGLVELIRLR RITKLVIAAA EDKHYSKKLD KPVSKTATEI MERADPSCKI WFVCKEQLVC TRSKEVQIAP LTVAAPLLPS PGHEAQHLQS
201: PQEEGDTEME PSFDDELEEA RKAVGELMRR ALKESCRRQK AEEEMATSLQ KAQEHEQLYL EEVKKREELE AALARADREI ARLRQAIQ
001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGYN GGSTCSS
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGYN GGSTCSS
Arabidopsis Description
PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.