Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90051 | Canola | cytosol | 79.08 | 78.83 |
| CDX83380 | Canola | cytosol | 63.73 | 68.9 |
| CDX95679 | Canola | cytosol, extracellular, plastid | 28.76 | 68.22 |
| AT1G01680.1 | Thale cress | cytosol | 56.21 | 55.84 |
| CDY58794 | Canola | nucleus | 16.34 | 30.67 |
| CDX89113 | Canola | cytosol | 31.7 | 28.45 |
| CDY42501 | Canola | cytosol | 30.72 | 27.57 |
| TraesCS6D01G319000.1 | Wheat | cytosol | 27.12 | 26.86 |
| CDY18888 | Canola | nucleus | 24.51 | 26.32 |
| CDY37075 | Canola | cytosol | 22.55 | 25.94 |
| CDX74775 | Canola | cytosol | 23.86 | 25.7 |
| CDX89114 | Canola | cytosol | 23.2 | 24.91 |
| CDY27349 | Canola | cytosol | 21.57 | 24.81 |
| CDY48923 | Canola | cytosol | 33.33 | 23.29 |
| CDY51567 | Canola | nucleus | 31.05 | 23.28 |
| CDY42502 | Canola | cytosol | 19.93 | 22.34 |
| CDY48922 | Canola | cytosol | 21.24 | 22.34 |
| CDX71740 | Canola | cytosol | 19.61 | 22.14 |
| HORVU1Hr1G053230.7 | Barley | cytosol | 16.99 | 21.85 |
| CDX90050 | Canola | nucleus | 38.24 | 20.56 |
| CDY15162 | Canola | nucleus | 37.25 | 20.07 |
| Os10t0552400-01 | Rice | cytosol | 26.8 | 19.03 |
| CDX71741 | Canola | nucleus | 24.18 | 18.32 |
| TraesCS1B01G221500.1 | Wheat | cytosol | 17.65 | 18.12 |
| HORVU5Hr1G077580.3 | Barley | plastid | 11.11 | 17.99 |
| TraesCS1D01G211200.1 | Wheat | cytosol | 23.53 | 17.82 |
| Os10t0548850-00 | Rice | cytosol | 23.53 | 17.78 |
| TraesCS1A01G207800.1 | Wheat | cytosol | 16.67 | 17.71 |
| Zm00001d029847_P001 | Maize | cytosol | 29.41 | 17.65 |
| TraesCS1A01G207900.1 | Wheat | cytosol | 23.53 | 17.18 |
| TraesCS1D01G211100.1 | Wheat | cytosol | 16.99 | 17.05 |
| HORVU1Hr1G053260.5 | Barley | cytosol | 20.91 | 15.8 |
| TraesCS1B01G221900.1 | Wheat | cytosol | 17.65 | 15.47 |
| OQU92181 | Sorghum | endoplasmic reticulum | 26.8 | 14.21 |
| CDY08273 | Canola | cytosol | 18.95 | 11.69 |
| CDY26075 | Canola | cytosol | 18.3 | 11.16 |
| CDY54713 | Canola | cytosol | 27.45 | 10.53 |
| CDY67215 | Canola | cytosol | 27.12 | 10.4 |
| CDY14575 | Canola | cytosol | 26.8 | 10.28 |
| CDX81289 | Canola | cytosol | 26.8 | 10.26 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078FPX3 | UniProt:A0A078FPX3 | EnsemblPlants:CDY15161 | ProteinID:CDY15161 |
| ProteinID:CDY15161.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00085336001 |
| InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR27003 | PANTHER:PTHR27003:SF52 |
| SMART:SM00504 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EF3EE9 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g00400DBnaC05g00400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPX3]
Coordinates
chrLK032052:+:184942..187166
Molecular Weight (calculated)
34465.6 Da
IEP (calculated)
6.699
GRAVY (calculated)
-0.692
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MGETLHNDVI YVAVNQDVRE SKSTLLWTLK TLPVKKLCLL HVHIPFSLNS SSCGLDESEI NAIQESELKS SYDSLHKYRD LCTNKEVDEE DVDISLISGY
101: GVGEGIVELI YQNNIKKLVM GAAADPHYSR GMSITSRKAE YVSQHAPHCC KMWFICKGKL IQKKEGSFGI GNPSDSFSGF DGFAQKPSRG RGIDSDDQPN
201: SRKEDSGRNQ TPKEVRKEDK PKSNDSETDS PPENFICPIS MEIMRDPHVA ADGFTYEEKE IRTWLNGGND KSPITGARLA HRHLTPNYTL RSLIKDWLHL
301: HPNYKH
101: GVGEGIVELI YQNNIKKLVM GAAADPHYSR GMSITSRKAE YVSQHAPHCC KMWFICKGKL IQKKEGSFGI GNPSDSFSGF DGFAQKPSRG RGIDSDDQPN
201: SRKEDSGRNQ TPKEVRKEDK PKSNDSETDS PPENFICPIS MEIMRDPHVA ADGFTYEEKE IRTWLNGGND KSPITGARLA HRHLTPNYTL RSLIKDWLHL
301: HPNYKH
001: MEDAIYVAVN QDVRESKKTL LWALKNLQVK KIFLLHVHLP FSLTTSSSRL EQSEIDAIQD SELNTSVNSL YKYRDICINK GVNEKDVDTS MISGHDVGEG
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR
Arabidopsis Description
PUB54U-box domain-containing protein 54 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.