CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51567	Canola	nucleus	63.8	25.49
CDX89113	Canola	cytosol	43.56	20.82
CDY42501	Canola	cytosol	41.72	19.94
CDX83380	Canola	cytosol	30.67	17.67
CDX90051	Canola	cytosol	31.9	16.94
CDY48923	Canola	cytosol	45.4	16.89
CDY15161	Canola	cytosol	30.67	16.34
CDY15162	Canola	nucleus	36.81	10.56
CDX90050	Canola	nucleus	36.81	10.54
CDY08273	Canola	cytosol	31.9	10.48
CDY26075	Canola	cytosol	30.06	9.76
CDX74775	Canola	cytosol	12.27	7.04
CDY18888	Canola	nucleus	12.27	7.02
CDX71741	Canola	nucleus	16.56	6.68
CDY54713	Canola	cytosol	32.52	6.64
CDY67215	Canola	cytosol	31.9	6.52
CDX81289	Canola	cytosol	31.9	6.51
CDY14575	Canola	cytosol	31.29	6.39
CDY37075	Canola	cytosol	10.43	6.39
CDY42502	Canola	cytosol	10.43	6.23
CDX71740	Canola	cytosol	9.82	5.9
CDX89114	Canola	cytosol	9.82	5.61
CDY48922	Canola	cytosol	9.82	5.5
CDY27349	Canola	cytosol	8.59	5.26
CDX95679	Canola	cytosol, extracellular, plastid	3.68	4.65

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078J6I8	UniProt:A0A078J6I8	EnsemblPlants:CDY58794	ProteinID:CDY58794
ProteinID:CDY58794.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00025147001	InterPro:IPR003613	InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF59	SMART:SM00504	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE298C	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaA07g38080DBnaA07g38080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6I8]

Coordinates

chrLK033699:+:39791..40355

Molecular Weight (calculated)

18696.4 Da

IEP (calculated)

4.969

GRAVY (calculated)

-0.548

Length

163 amino acids

Sequence
(BLAST)

001: MRSESESRIA ESSMVIRELQ GDHCVLMEVL RRLGDEREEL KIKLRKVSKL KSKREGEEVS PSRDPELPQY FLCPITQDVM EDPQVAADGF TYEGEAIRCW
101: LDSGHETSPM TNKRLIHTSL VPNLSLRSAI QEWLQDSSSW IIEPDPLFVK DLIKRGLKSL EAN

Best Arabidopsis Sequence Match ( AT3G61390.2 )
(BLAST)

001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI

Arabidopsis Description

PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.