CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037092.1-P	Field mustard	cytosol	99.6	99.6
CDY26075	Canola	cytosol	89.92	88.84
AT1G56030.1	Thale cress	cytosol	26.81	34.02
AT1G56040.1	Thale cress	cytosol	27.42	32.38
CDY58794	Canola	nucleus	10.48	31.9
CDX89113	Canola	cytosol	17.34	25.22
CDY42501	Canola	cytosol	16.94	24.63
CDY48923	Canola	cytosol	19.76	22.37
CDY51567	Canola	nucleus	17.14	20.83
CDY15161	Canola	cytosol	11.69	18.95
CDX90051	Canola	cytosol	11.49	18.57
CDX83380	Canola	cytosol	10.28	18.02
CDY15162	Canola	nucleus	19.76	17.25
CDX90050	Canola	nucleus	19.35	16.87
CDX71741	Canola	nucleus	11.69	14.36
CDY42502	Canola	cytosol	7.26	13.19
CDY67215	Canola	cytosol	19.15	11.9
CDY14575	Canola	cytosol	19.15	11.9
CDY54713	Canola	cytosol	18.55	11.53
CDX89114	Canola	cytosol	6.45	11.23
CDX81289	Canola	cytosol	17.94	11.14
CDX71740	Canola	cytosol	5.65	10.33
CDY27349	Canola	cytosol	5.24	9.77
CDY37075	Canola	cytosol	5.24	9.77
CDX74775	Canola	cytosol	5.44	9.51
CDY48922	Canola	cytosol	5.44	9.28
CDY18888	Canola	nucleus	5.24	9.12
CDX95679	Canola	cytosol, extracellular, plastid	2.02	7.75

Protein Annotations

Gene3D:1.25.40.180	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078F941	UniProt:A0A078F941	InterPro:ARM-type_fold
EnsemblPlants:CDY08273	ProteinID:CDY08273	ProteinID:CDY08273.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00125603001	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR016021	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
PFAM:PF02854	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	SMART:SM00504
SMART:SM00543	SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE5997	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

BnaA05g13460DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078F941]

Coordinates

chrLK031984:-:494333..496307

Molecular Weight (calculated)

57744.6 Da

IEP (calculated)

4.967

GRAVY (calculated)

-0.602

Length

496 amino acids

Sequence
(BLAST)

001: MSKMNSQTSY GVVGNPNEEK RVIEKARSLL NWLTERNFDK IKDEIVQTII RASPSAFVIK SLVCFILDMA MVDSTANVLF ARLSVHLFQS LPPFPSADRH
101: GEITTFERLF LCKCRMELEH SSPETDRHAP LVYVDESDCW RFIKTVRLLA EIFKNRMLSQ TTRQSIIQVL MNPIFPPERN TDSMNCFLSF VGVLADFKFC
201: DENFKQLVQN SRAVELESSY NEQVTLRKEA EDALARNEGE LDLMKRLLES YKEDKCKLHL HAQGLEQEYQ NESKLRKETE CALAIERESI AKVRLRLETL
301: ENEHNNLRLK AEELESNYTD ELILRKESEV SLDKERNELE AMTQVFETCK IEQENLTSQV RTWQDKYDQE LSVRKETDDS LSRQKEELEI VKGLLEAYNQ
401: EADAMREERD SALQTVQELT RKHLEERQPP PSFYCPITQE VMKDPHFAAD GFTYEAEAIK KWFSTGHETS PMTNLQLPHR NLVPNRALRS AIQDLI

Best Arabidopsis Sequence Match ( AT1G56040.1 )
(BLAST)

001: MVENSYVLFA RLCVELFHEL PPLPSDESHG DITTFERLFL RKCRIELENA SPKTEHLPLV YVDETNYYRF IKTVRVLAEV YKNSKITETT RKSMIQVLMN
101: PILPPERITD AMNLFRSIIG KLADFHFSDE KFNQLVRSSR VVELEGNYNE EVKLRKEAED ALAMKKEDVE MMEQLLESYK EEQGKLQLQA KALEHKLEAE
201: LRHRKETETL LAIERDRIEK VKIQLETVEN EIDNTRLKAE EFERKYEGEM ILRRESEIAL EKEKKELEEV KLKLETYERE QENLSSEVRT WQDKYEQESS
301: LRKLSEYALS REQEELQIVK GLLEFYNGEA DAMREERDKA LKTAKEQMEK RQPPSSFFCP ITQEVMKDPH FAADGFTYEA ESIRKWLSTG HQTSPMTNLR
401: LSHLTLVPNR ALRSAIEELV

Arabidopsis Description

PUB58Putative U-box domain-containing protein 58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.