CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89114	Canola	cytosol	85.71	82.11
CDY48922	Canola	cytosol	58.24	54.64
CDX71740	Canola	cytosol	51.28	51.66
CDY27349	Canola	cytosol	47.25	48.5
CDY37075	Canola	cytosol	46.89	48.12
AT3G61410.3	Thale cress	cytosol	54.58	45.15
CDX74775	Canola	cytosol	43.96	42.25
CDY18888	Canola	nucleus	43.22	41.4
HORVU1Hr1G053230.7	Barley	cytosol	23.81	27.31
CDY42501	Canola	cytosol	29.3	23.46
CDX95679	Canola	cytosol, extracellular, plastid	10.99	23.26
HORVU5Hr1G077580.3	Barley	plastid	15.38	22.22
CDX89113	Canola	cytosol	27.47	21.99
TraesCS1A01G207800.1	Wheat	cytosol	22.71	21.53
TraesCS6D01G319000.1	Wheat	cytosol	23.81	21.04
TraesCS1B01G221500.1	Wheat	cytosol	22.71	20.81
TraesCS1D01G211100.1	Wheat	cytosol	23.08	20.66
CDY15161	Canola	cytosol	22.34	19.93
CDX90051	Canola	cytosol	22.34	19.87
CDX83380	Canola	cytosol	20.15	19.43
CDX71741	Canola	nucleus	27.84	18.81
CDY48923	Canola	cytosol	30.04	18.72
CDY51567	Canola	nucleus	27.11	18.14
TraesCS1B01G221900.1	Wheat	cytosol	22.34	17.48
TraesCS1D01G211200.1	Wheat	cytosol	23.08	15.59
TraesCS1A01G207900.1	Wheat	cytosol	23.44	15.27
Os10t0552400-01	Rice	cytosol	23.44	14.85
HORVU1Hr1G053260.5	Barley	cytosol	21.61	14.57
Os10t0548850-00	Rice	cytosol	20.88	14.07
Zm00001d029847_P001	Maize	cytosol	23.81	12.75
CDX90050	Canola	nucleus	24.18	11.6
CDY15162	Canola	nucleus	23.44	11.27
CDY58794	Canola	nucleus	6.23	10.43
OQU92181	Sorghum	endoplasmic reticulum	21.25	10.05
CDY08273	Canola	cytosol	13.19	7.26
CDX81289	Canola	cytosol	20.15	6.88
CDY54713	Canola	cytosol	19.41	6.64
CDY26075	Canola	cytosol	12.09	6.57
CDY67215	Canola	cytosol	19.05	6.52
CDY14575	Canola	cytosol	19.05	6.52

Protein Annotations

EnsemblPlants:CDY42502	EnsemblPlantsGene:GSBRNA2T00074940001	Gene3D:3.40.50.620	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	ncoils:Coil
PANTHER:PTHR31964	PANTHER:PTHR31964:SF43	ProteinID:CDY42502	ProteinID:CDY42502.1	SEG:seg	UniParc:UPI0004EEA1BF
UniProt:A0A078HXE3	MapMan:35.1	:	:	:	:

Description

BnaC04g21790DBnaC04g21790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXE3]

Coordinates

chrLK032526:+:220362..222024

Molecular Weight (calculated)

30568.4 Da

IEP (calculated)

5.141

GRAVY (calculated)

-0.425

Length

273 amino acids

Sequence
(BLAST)

001: MEFQGARENN MEEEEEAAEE RIYVAVGNET AKNRSNLTWA IDNSEGSKIC IVLIHQPAQM IPVLGTKFHA ATVDEELVRA YREKEKANTD KILDEYLRIC
101: LQKRVHAEKL CVEMDSIEKG IVQMISRNRV KKFVMGAAAD KHYSTKMVNL RSRKAIFVCQ QASVTCHIRE PIINEVQALL SSEVEEGEEE EERISRTSSC
201: RSASTSSYYG GSEASSSIDI DEVSSIITEE TLSNHSPPPS LPCSGMGLGM ITFLINSTKL LHRLAIQNQK QPE

Best Arabidopsis Sequence Match ( AT2G45910.1 )
(BLAST)

001: MALVSPIPAM GERAGSMRFH GIGSPGSRSS RSGIMDEPVS RLIDEKIFVA VDKHVAKSKS TLIWALQNTG GKKICLIHVH QPSQMIPLMG AKFPVGAVKE
101: EEVRVFREKE REKVHMILDD YLRICQQRGV RAEKMFIEME SIENGIVQLI SELGIRKLVM GAAADRHYSR RMTDLKSRKA IFVRREAPTL CQIWFTCKGY
201: LIHTREATMD DTESEYASPR PSISASDLLQ TFSTPESEHQ HISRVQSTDS VQQLVSNGSS TEQSGRVSDG SLNTDEEERE SDGSEVTGSA TVMSSGHSSP
301: SSFPDGVDDS FNVKIRKATS EAHSSKQEAF AETLRRQKAE KNALDAIRRA KQSESAYSEE LKRRKDTEIA VAKEKERFIT IKNEQEVIME ELQSAMAQKA
401: MLESQIAKSD GTMEKLNQKL DIAVKLLQKL RDEREELQTE RDRALREAEE LRSHAETSTL QLPQYFTDFS FSEIEEATNH FDSTLKIGEG GYGSIYVGLL
501: RHTQVAIKML NPNSSQGPVE YQQEVDVLSK MRHPNIITLI GACPEGWSLV YEYLPGGSLE DRLTCKDNSP PLSWQNRVRI ATEICAALVF LHSNKAHSLV
601: HGDLKPANIL LDSNLVSKLS DFGTCSLLHP NGSKSVRTDV TGTVAYLDPE ASSSGELTPK SDVYSFGIIL LRLLTGRPAL RISNEVKYAL DNGTLNDLLD
701: PLAGDWPFVQ AEQLARLALR CCETVSENRP DLGTEVWRVL EPMRASSGGS SSFHLGRNEH RIAPPYFICP IFQEVMQDPH VAADGFTYEA EAIRAWLDSE
801: HDTSPMTNVK LSHTSLIANH ALRSAIQEWL QHHL

Arabidopsis Description

PUB33U-box domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.