Factsheet for TraesCS1A01G207900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G119600.1
TraesCS5A01G194900.2
TraesCS5B01G116300.1
TraesCS5B01G190300.1
TraesCS5D01G125900.1
TraesCS5D01G126000.1
TraesCS5D01G198100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45920.1	TraesCS5A01G119600.1	AT1G34430.1	21798944
AT2G45920.1	TraesCS5B01G116300.1	AT1G34430.1	21798944
AT2G45920.1	TraesCS5D01G125900.1	AT1G34430.1	21798944
AT2G45920.1	TraesCS5D01G126000.1	AT1G34430.1	21798944
AT2G45920.1	TraesCS5A01G194900.2	AT2G46550.1	21798944
AT2G45920.1	TraesCS5B01G190300.1	AT2G46550.1	21798944
AT2G45920.1	TraesCS5D01G198100.1	AT2G46550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G211200.1	Wheat	cytosol	85.2	88.37
TraesCS1B01G221900.1	Wheat	cytosol	71.36	85.67
HORVU1Hr1G053260.5	Barley	cytosol	79.71	82.47
TraesCS1A01G207800.1	Wheat	cytosol	44.87	65.28
Os10t0552400-01	Rice	cytosol	48.45	47.1
Zm00001d029847_P001	Maize	cytosol	48.21	39.61
OQU92181	Sorghum	endoplasmic reticulum	48.93	35.53
Bra007601.1-P	Field mustard	cytosol	13.84	32.58
Bra014438.1-P	Field mustard	cytosol	18.14	27.34
CDX89114	Canola	cytosol	18.38	27.02
CDX74775	Canola	cytosol	17.9	26.41
Bra039304.1-P	Field mustard	cytosol	16.71	26.32
CDY18888	Canola	nucleus	17.9	26.32
CDY37075	Canola	cytosol	16.71	26.32
Bra004948.1-P	Field mustard	cytosol	17.66	26.06
CDY27349	Canola	cytosol	16.47	25.94
CDX71740	Canola	cytosol	16.23	25.09
CDY48922	Canola	cytosol	17.18	24.74
AT1G01680.1	Thale cress	cytosol	18.14	24.68
Bra033242.1-P	Field mustard	nucleus	15.04	24.14
CDX89113	Canola	cytosol	19.57	24.05
Bra014439.1-P	Field mustard	cytosol	19.57	24.05
CDX90051	Canola	cytosol	17.42	23.78
CDY51567	Canola	nucleus	22.91	23.53
CDY15161	Canola	cytosol	17.18	23.53
AT2G45920.1	Thale cress	cytosol	22.43	23.5
CDY42502	Canola	cytosol	15.27	23.44
CDY42501	Canola	cytosol	18.85	23.17
Bra003448.1-P	Field mustard	nucleus	23.39	23.11
AT3G61390.2	Thale cress	cytosol	23.63	22.76
CDY48923	Canola	cytosol	23.39	22.37
CDX71741	Canola	nucleus	21.48	22.28
CDX83380	Canola	cytosol	15.04	22.26
Bra000412.1-P	Field mustard	cytosol	15.04	22.26
AT1G01670.1	Thale cress	nucleus	19.33	22.19
Bra007600.1-P	Field mustard	cytosol	23.15	22.15
AT3G61410.3	Thale cress	cytosol	16.71	21.21
CDX95679	Canola	cytosol, extracellular, plastid	6.44	20.93
AT1G01660.2	Thale cress	nucleus	25.3	18.63
Bra033244.1-P	Field mustard	cytosol	23.63	18.54
Bra033243.1-P	Field mustard	cytosol, plastid	22.67	18.41
CDX90050	Canola	nucleus	24.82	18.28
CDY15162	Canola	nucleus	23.87	17.61
Bra010318.1-P	Field mustard	cytosol	20.05	15.24
VIT_00s0772g00010.t01	Wine grape	cytosol	18.38	11.77
KRH74477	Soybean	cytosol	20.53	10.74
KRH39466	Soybean	cytosol	19.81	10.38
KRG99475	Soybean	cytosol	19.33	10.15
Bra024393.1-P	Field mustard	cytosol	19.09	10.03
CDY67215	Canola	cytosol	19.09	10.03
CDX81289	Canola	cytosol	18.85	9.89
CDY54713	Canola	cytosol	18.62	9.77
Bra037819.1-P	Field mustard	cytosol	18.62	9.77
CDY14575	Canola	cytosol	18.62	9.77
AT5G65500.2	Thale cress	cytosol	17.9	9.39
Solyc11g010700.1.1	Tomato	cytosol	15.75	8.27
PGSC0003DMT400041610	Potato	cytosol	8.83	7.1

Protein Annotations

EnsemblPlants:TraesCS1A01G207900.1	EnsemblPlantsGene:TraesCS1A01G207900	Gene3D:3.40.50.620	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	ncoils:Coil
PANTHER:PTHR27003	PANTHER:PTHR27003:SF52	SEG:seg	TIGR:cd01989	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:+:369579427..369581358

Molecular Weight (calculated)

46312.0 Da

IEP (calculated)

5.047

GRAVY (calculated)

-0.370

Length

419 amino acids

Sequence
(BLAST)

001: MEAAVAVAVE DENNRKVFVV VPAERRAGRS TLSWALGHLC GGATATTVVV THVHVPPQMI PVMGAKFHAS KLSSEQVSSF RRMERDKADK MLDDYVHECR
101: KTKVRCEKLV IEKEDVASGL VELIGLRGIT ELVVSAAADR QYSTKLDRPT CRTAAAIMQR ADPSCKIWFV CKEQLICTRE AKVEIASSAV TAPLLPNPGH
201: EVLRLSTHQE EDDDDIEVEL GFYDELTEAC RAAEDLMNRA LNESRRRHKA DEEVATSLLK AKEHEELYLE EVKKREELEA ALARAEKEIS ELRQAIQRDT
301: VEEESGEATA TMSAPGLQST SKEEPEAVLW HCQCQCQRKL AASSSPSSVI IPWSPRADED GFTCEAGVAG CCWLDGMPSP EGVAVAGVAL PLARPSFALR
401: AAVEEYTRRQ QQQQRCPFP

Best Arabidopsis Sequence Match ( AT2G45910.1 )
(BLAST)

001: MALVSPIPAM GERAGSMRFH GIGSPGSRSS RSGIMDEPVS RLIDEKIFVA VDKHVAKSKS TLIWALQNTG GKKICLIHVH QPSQMIPLMG AKFPVGAVKE
101: EEVRVFREKE REKVHMILDD YLRICQQRGV RAEKMFIEME SIENGIVQLI SELGIRKLVM GAAADRHYSR RMTDLKSRKA IFVRREAPTL CQIWFTCKGY
201: LIHTREATMD DTESEYASPR PSISASDLLQ TFSTPESEHQ HISRVQSTDS VQQLVSNGSS TEQSGRVSDG SLNTDEEERE SDGSEVTGSA TVMSSGHSSP
301: SSFPDGVDDS FNVKIRKATS EAHSSKQEAF AETLRRQKAE KNALDAIRRA KQSESAYSEE LKRRKDTEIA VAKEKERFIT IKNEQEVIME ELQSAMAQKA
401: MLESQIAKSD GTMEKLNQKL DIAVKLLQKL RDEREELQTE RDRALREAEE LRSHAETSTL QLPQYFTDFS FSEIEEATNH FDSTLKIGEG GYGSIYVGLL
501: RHTQVAIKML NPNSSQGPVE YQQEVDVLSK MRHPNIITLI GACPEGWSLV YEYLPGGSLE DRLTCKDNSP PLSWQNRVRI ATEICAALVF LHSNKAHSLV
601: HGDLKPANIL LDSNLVSKLS DFGTCSLLHP NGSKSVRTDV TGTVAYLDPE ASSSGELTPK SDVYSFGIIL LRLLTGRPAL RISNEVKYAL DNGTLNDLLD
701: PLAGDWPFVQ AEQLARLALR CCETVSENRP DLGTEVWRVL EPMRASSGGS SSFHLGRNEH RIAPPYFICP IFQEVMQDPH VAADGFTYEA EAIRAWLDSE
801: HDTSPMTNVK LSHTSLIANH ALRSAIQEWL QHHL

Arabidopsis Description

PUB33U-box domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.