Factsheet for AT1G01680.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95679	Canola	cytosol, extracellular, plastid	25.65	61.24
CDX90051	Canola	cytosol	61.04	61.24
CDX83380	Canola	cytosol	55.52	60.42
Bra000412.1-P	Field mustard	cytosol	55.52	60.42
Bra033242.1-P	Field mustard	nucleus	49.68	58.62
CDY15161	Canola	cytosol	55.84	56.21
AT1G01670.1	Thale cress	nucleus	39.29	33.15
TraesCS6D01G319000.1	Wheat	cytosol	27.92	27.83
AT2G45920.1	Thale cress	cytosol	32.79	25.25
HORVU1Hr1G053230.7	Barley	cytosol	18.83	24.37
AT3G61390.2	Thale cress	cytosol	33.77	23.91
AT1G01660.2	Thale cress	nucleus	40.91	22.14
TraesCS1B01G221500.1	Wheat	cytosol	20.13	20.81
TraesCS1A01G207800.1	Wheat	cytosol	18.18	19.44
Os10t0552400-01	Rice	cytosol	26.95	19.26
Os10t0548850-00	Rice	cytosol	25.0	19.01
TraesCS1D01G211200.1	Wheat	cytosol	24.68	18.81
TraesCS1D01G211100.1	Wheat	cytosol	18.51	18.69
TraesCS1A01G207900.1	Wheat	cytosol	24.68	18.14
TraesCS1B01G221900.1	Wheat	cytosol	20.45	18.05
AT3G61410.3	Thale cress	cytosol	18.83	17.58
HORVU1Hr1G053260.5	Barley	cytosol	23.05	17.53
HORVU5Hr1G077580.3	Barley	plastid	10.71	17.46
Zm00001d029847_P001	Maize	cytosol	28.9	17.45
OQU92181	Sorghum	endoplasmic reticulum	26.95	14.38
AT1G56040.1	Thale cress	cytosol	19.48	14.29
AT1G56030.1	Thale cress	cytosol	14.94	11.76
AT5G65500.2	Thale cress	cytosol	28.9	11.14

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.620	MapMan:35.1	EntrezGene:839251	UniProt:A0A178WFK8	ProteinID:AAF78398.1
ProteinID:AEE27321.1	ArrayExpress:AT1G01680	EnsemblPlantsGene:AT1G01680	RefSeq:AT1G01680	TAIR:AT1G01680	RefSeq:AT1G01680-TAIR-G
EnsemblPlants:AT1G01680.1	TAIR:AT1G01680.1	Symbol:ATPUB54	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR014729	RefSeq:NP_171674.2
ProteinID:OAP17118.1	PFAM:PF00582	PFAM:PF04564	PO:PO:0000293	PFscan:PS51698	PANTHER:PTHR27003
PANTHER:PTHR27003:SF52	UniProt:Q9LQ92	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00504	SUPFAM:SSF57850	UniParc:UPI00000A738E
InterPro:Ubox_domain	InterPro:UspA	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

PUB54U-box domain-containing protein 54 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ92]

Coordinates

chr1:-:246262..248440

Molecular Weight (calculated)

35393.8 Da

IEP (calculated)

6.860

GRAVY (calculated)

-0.783

Length

308 amino acids

Sequence
(BLAST)

001: MEDAIYVAVN QDVRESKKTL LWALKNLQVK KIFLLHVHLP FSLTTSSSRL EQSEIDAIQD SELNTSVNSL YKYRDICINK GVNEKDVDTS MISGHDVGEG
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.