Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000412.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX95679 | Canola | cytosol, extracellular, plastid | 35.69 | 78.29 |
| CDY15161 | Canola | cytosol | 68.9 | 63.73 |
| CDX90051 | Canola | cytosol | 68.9 | 63.52 |
| AT1G01680.1 | Thale cress | cytosol | 60.42 | 55.52 |
| CDY58794 | Canola | nucleus | 17.67 | 30.67 |
| TraesCS6D01G319000.1 | Wheat | cytosol | 31.45 | 28.8 |
| CDX89113 | Canola | cytosol | 32.51 | 26.98 |
| CDY42501 | Canola | cytosol | 31.8 | 26.39 |
| CDY27349 | Canola | cytosol | 23.32 | 24.81 |
| CDX74775 | Canola | cytosol | 24.38 | 24.3 |
| CDY18888 | Canola | nucleus | 24.38 | 24.21 |
| CDY37075 | Canola | cytosol | 22.61 | 24.06 |
| CDY51567 | Canola | nucleus | 34.28 | 23.77 |
| CDX89114 | Canola | cytosol | 23.67 | 23.51 |
| CDY48923 | Canola | cytosol | 34.98 | 22.6 |
| HORVU1Hr1G053230.7 | Barley | cytosol | 17.67 | 21.01 |
| CDY48922 | Canola | cytosol | 21.55 | 20.96 |
| CDX71740 | Canola | cytosol | 19.79 | 20.66 |
| CDY42502 | Canola | cytosol | 19.43 | 20.15 |
| CDX90050 | Canola | nucleus | 37.81 | 18.8 |
| CDY15162 | Canola | nucleus | 36.04 | 17.96 |
| CDX71741 | Canola | nucleus | 24.38 | 17.08 |
| Os10t0552400-01 | Rice | cytosol | 25.44 | 16.71 |
| Os10t0548850-00 | Rice | cytosol | 23.32 | 16.3 |
| TraesCS1B01G221500.1 | Wheat | cytosol | 16.96 | 16.11 |
| HORVU5Hr1G077580.3 | Barley | plastid | 10.6 | 15.87 |
| Zm00001d029847_P001 | Maize | cytosol | 28.27 | 15.69 |
| TraesCS1D01G211200.1 | Wheat | cytosol | 22.26 | 15.59 |
| TraesCS1A01G207800.1 | Wheat | cytosol | 15.55 | 15.28 |
| TraesCS1A01G207900.1 | Wheat | cytosol | 22.26 | 15.04 |
| TraesCS1D01G211100.1 | Wheat | cytosol | 15.9 | 14.75 |
| HORVU1Hr1G053260.5 | Barley | cytosol | 20.49 | 14.32 |
| TraesCS1B01G221900.1 | Wheat | cytosol | 16.96 | 13.75 |
| OQU92181 | Sorghum | endoplasmic reticulum | 27.92 | 13.69 |
| CDY08273 | Canola | cytosol | 18.02 | 10.28 |
| CDY26075 | Canola | cytosol | 18.02 | 10.16 |
| CDY54713 | Canola | cytosol | 27.21 | 9.65 |
| CDY67215 | Canola | cytosol | 26.15 | 9.27 |
| CDX81289 | Canola | cytosol | 26.15 | 9.26 |
| CDY14575 | Canola | cytosol | 25.44 | 9.02 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078D2M2 | EnsemblPlants:CDX83380 | ProteinID:CDX83380 | ProteinID:CDX83380.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00138946001 | InterPro:IPR003613 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR27003 | PANTHER:PTHR27003:SF52 | SMART:SM00504 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI000253FEAB | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | : |
Description
BnaA03g21260D
Coordinates
chrLK031832:+:1266555..1268465
Molecular Weight (calculated)
31860.5 Da
IEP (calculated)
7.273
GRAVY (calculated)
-0.591
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MGETLYSNVT YVAVNQDFRE SKLNLLWTLK TLRVKKLCLL QVHIPFSLNP SSCGLDESEI NAIQDSELKT SYDSLYKYRD ICTNEGVNEK DVGISLVSGY
101: GVGEEIVKLI NQNNIKKLVM GAAADPHYSR GMSITSRKAE YVSQHAPTRC KIWFICKGKL IKTREGSFDL GNPSDSFTEL HTSTQNPNKG NDPDKDHSVS
201: NGSEADCAPE DYLCPISKDI MRDPHVAADG FTYEAKNIRY WLNIGNNTSP NTGARLAHRD LTPNYTLRSL IKDWLQHHPN YKH
101: GVGEEIVKLI NQNNIKKLVM GAAADPHYSR GMSITSRKAE YVSQHAPTRC KIWFICKGKL IKTREGSFDL GNPSDSFTEL HTSTQNPNKG NDPDKDHSVS
201: NGSEADCAPE DYLCPISKDI MRDPHVAADG FTYEAKNIRY WLNIGNNTSP NTGARLAHRD LTPNYTLRSL IKDWLQHHPN YKH
001: MEDAIYVAVN QDVRESKKTL LWALKNLQVK KIFLLHVHLP FSLTTSSSRL EQSEIDAIQD SELNTSVNSL YKYRDICINK GVNEKDVDTS MISGHDVGEG
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR
Arabidopsis Description
PUB54U-box domain-containing protein 54 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.