Factsheet for Os10t0548850-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0400300-01
Os09t0363500-01
Os12t0182200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45920.1	Os12t0182200-01	AT1G34430.1	21798944
AT2G45920.1	Os08t0400300-01	AT2G46550.1	21798944
AT2G45920.1	Os09t0363500-01	AT2G46550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0552400-01	Rice	cytosol	50.12	47.1
Bra014439.1-P	Field mustard	cytosol	22.72	26.98
CDX89113	Canola	cytosol	22.72	26.98
CDY42501	Canola	cytosol	21.98	26.1
Bra007601.1-P	Field mustard	cytosol	11.36	25.84
AT1G01680.1	Thale cress	cytosol	19.01	25.0
AT2G45920.1	Thale cress	cytosol	24.44	24.75
AT3G61390.2	Thale cress	cytosol	25.93	24.14
CDY15161	Canola	cytosol	17.78	23.53
CDX90051	Canola	cytosol	17.78	23.45
CDX83380	Canola	cytosol	16.3	23.32
Bra000412.1-P	Field mustard	cytosol	16.3	23.32
CDY51567	Canola	nucleus	23.21	23.04
Bra033242.1-P	Field mustard	nucleus	14.81	22.99
Bra039304.1-P	Field mustard	cytosol	15.06	22.93
CDY37075	Canola	cytosol	15.06	22.93
CDY48923	Canola	cytosol	24.69	22.83
Bra003448.1-P	Field mustard	nucleus	23.7	22.64
Bra007600.1-P	Field mustard	cytosol	24.44	22.6
CDY27349	Canola	cytosol	14.81	22.56
Bra014438.1-P	Field mustard	cytosol	14.81	21.58
CDX89114	Canola	cytosol	15.06	21.4
CDX74775	Canola	cytosol	14.81	21.13
Bra004948.1-P	Field mustard	cytosol	14.81	21.13
CDY18888	Canola	nucleus	14.81	21.05
CDY42502	Canola	cytosol	14.07	20.88
CDY48922	Canola	cytosol	14.81	20.62
CDX71740	Canola	cytosol	13.58	20.3
AT1G01670.1	Thale cress	nucleus	18.27	20.27
CDX95679	Canola	cytosol, extracellular, plastid	6.42	20.16
Bra033244.1-P	Field mustard	cytosol	24.94	18.91
Os06t0159900-01	Rice	cytosol, plastid	15.8	18.66
Bra033243.1-P	Field mustard	cytosol, plastid	22.22	17.44
CDX71741	Canola	nucleus	17.28	17.33
CDX90050	Canola	nucleus	24.2	17.22
AT1G01660.2	Thale cress	nucleus	23.95	17.05
CDY15162	Canola	nucleus	23.7	16.9
AT3G61410.3	Thale cress	cytosol	12.84	15.76
Bra010318.1-P	Field mustard	cytosol	20.99	15.43
CDY54713	Canola	cytosol	23.7	12.03
CDY67215	Canola	cytosol	23.7	12.03
CDX81289	Canola	cytosol	23.7	12.02
Bra024393.1-P	Field mustard	cytosol	23.46	11.9
AT5G65500.2	Thale cress	cytosol	23.46	11.89
KRH39466	Soybean	cytosol	23.46	11.88
Bra037819.1-P	Field mustard	cytosol	23.21	11.78
CDY14575	Canola	cytosol	23.21	11.78
KRH74477	Soybean	cytosol	22.72	11.49
KRG99475	Soybean	cytosol	22.47	11.4
VIT_00s0772g00010.t01	Wine grape	cytosol	18.02	11.16
PGSC0003DMT400041610	Potato	cytosol	11.85	9.21
Solyc11g010700.1.1	Tomato	cytosol	14.32	7.27

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.620	MapMan:35.1	UniProt:A0A0P0XX00	ProteinID:BAT11934.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004842	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR014729	EnsemblPlantsGene:Os10g0548850	EnsemblPlants:Os10t0548850-00	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR27003	PANTHER:PTHR27003:SF52	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF57850
UniParc:UPI000393BF58	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

plant U-box-containing protein 58, U-box protein 58U box domain domain containing protein. (Os10t0548850-00)

Coordinates

chr10:-:21479425..21482015

Molecular Weight (calculated)

45938.9 Da

IEP (calculated)

6.458

GRAVY (calculated)

-0.474

Length

405 amino acids

Sequence
(BLAST)

001: MDPATRAAAA AVEKVFVALP AEKGKTTLSW ALGHFRGSGA KLVVTHVHVP PQTIPVMGVQ FHVSNVSPEQ VSLFRRTERE RVNKLLDEYV HQCWKMKVKC
101: EKLVIEKEDV VAGLLELIAS HGITKLVIAA AADKHYSRDK KVETTQSVTP LSQLFKIDTP PSPDIGQTIL QPSAEQEQND NEMELGFSDE LNDARVAAEN
201: LMERALSESL RRQRADEQVV SSLQKVKQFE ELYLEEVKRR KELEGALVKA NLELTRLKQE MDIPRNHQST ILGDRQEVIT DKFILRQQTV DMKSDFGATG
301: QLIKPQQEYL QLHPDHDNGV RQPETLLHRR SLTAFSPAST EIMREPCIAA DGFTYEAEAI INWFDEGHEV SPMTKQPLVH RDLIPNFALR SVIQDYTRRK
401: QYSFS

Best Arabidopsis Sequence Match ( AT3G61390.2 )
(BLAST)

001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI

Arabidopsis Description

PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.