Factsheet for Os06t0159900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0548850-00	Rice	cytosol	18.66	15.8
Os10t0552400-01	Rice	cytosol	18.66	14.85

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4340201	EMBL:AK063418	ProteinID:BAD67621.1
ProteinID:BAD69206.1	ProteinID:BAF18789.1	ProteinID:BAS96273.1	ncoils:Coil	ProteinID:EEE65133.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013083	InterPro:IPR019734
EnsemblPlantsGene:Os06g0159900	EnsemblPlants:Os06t0159900-01	PFAM:PF04564	PFscan:PS50005	PFscan:PS50293	PFscan:PS51698
PANTHER:PTHR27003	PANTHER:PTHR27003:SF99	UniProt:Q5VMW9	SMART:SM00028	SMART:SM00504	SUPFAM:SSF48452
SUPFAM:SSF57850	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000045792E	InterPro:Ubox_domain
RefSeq:XP_015642918.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

plant U-box-containing protein 63, U-box protein 63Similar to Arm repeat containing protein. (Os06t0159900-01)

Coordinates

chr6:+:3051248..3055005

Molecular Weight (calculated)

39346.7 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.673

Length

343 amino acids

Sequence
(BLAST)

001: MSPVRFNPWR AAEAEVQGVK RKGDSCYNKG SYGKAIKHYT RGAELDPSDI SFLIKRAKAL SGLGQYQECV RDCNDALRRG EELGSGSSGN KLISEALLWK
101: ASALEHLADC AADYEQVILL LRRSLETCHS EEAQIRLKGA LFMREQYEEL KSQKLECGAY PTYTQHLYPA RLEERINMDK TRLNTLLKHA TKELQKNEDK
201: LSEERSRRKE YEDMVMAIQA SIEQLTMNHD AELKSVREDK ANLECQLLQC TEKLERLQSI LNREPPFTCP IFLHVMEDPY ITADGHTYDG EAIRAWLDAG
301: HDTSPVTNLP LEHMELIPNR ALRSAIVWWH EQQNAAREHR DMA

Best Arabidopsis Sequence Match ( AT3G61390.4 )
(BLAST)

001: MFHEQKLRLY RKEKDKAHKN SEKYLQICRQ MQVTAEIIYI ETDSVEKGIL QLISQRGVTK LVMGAAADRH YSMRMRDLKS KKAIYIHREA PATCLIWFTC
101: NGYLICSREA RRANNLYLEC ASSNSLSQSD ITRGTESIVK DDDHLIKLAV TEAEASKRKA RFEACKREEA EKTAVDALKK AKQWENVYFE ELKQRKETEK
201: ALRKRNDELE KMRSESETQI TESYTVIRKL QEKNNLSMET FRGIREEQEE LKIKLREVSK LKGKREEEEA STSNHREPPQ YFICPITHDI MEDPHVAADG
301: FTYEGEAISR WFERGHETSP MINKRLPHTS LVPNLALRSA IQEWLQLREL LNRPSACREI

Arabidopsis Description

PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.