Factsheet for Bra014439.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89113	Canola	cytosol	98.83	98.83
AT3G61390.2	Thale cress	cytosol	67.45	52.87
Bra007600.1-P	Field mustard	cytosol	66.57	51.83
Bra003448.1-P	Field mustard	nucleus	63.64	51.18
Bra007601.1-P	Field mustard	cytosol	18.18	34.83
Bra033242.1-P	Field mustard	nucleus	25.22	32.95
Bra000412.1-P	Field mustard	cytosol	26.69	32.16
TraesCS6D01G319000.1	Wheat	cytosol	27.57	30.42
Bra014438.1-P	Field mustard	cytosol	24.63	30.22
Bra004948.1-P	Field mustard	cytosol	24.05	28.87
Bra039304.1-P	Field mustard	cytosol	20.82	26.69
HORVU1Hr1G053230.7	Barley	cytosol	16.13	23.11
Os10t0552400-01	Rice	cytosol	28.74	22.74
Os10t0548850-00	Rice	cytosol	26.98	22.72
Bra033244.1-P	Field mustard	cytosol	35.19	22.47
TraesCS1A01G207800.1	Wheat	cytosol	18.18	21.53
Bra033243.1-P	Field mustard	cytosol, plastid	31.96	21.12
TraesCS1B01G221500.1	Wheat	cytosol	17.89	20.47
Zm00001d029847_P001	Maize	cytosol	30.21	20.2
TraesCS1D01G211200.1	Wheat	cytosol	23.75	20.05
TraesCS1D01G211100.1	Wheat	cytosol	17.89	20.0
TraesCS1A01G207900.1	Wheat	cytosol	24.05	19.57
TraesCS1B01G221900.1	Wheat	cytosol	19.65	19.2
Bra010318.1-P	Field mustard	cytosol	30.21	18.69
HORVU1Hr1G053260.5	Barley	cytosol	21.7	18.27
Bra037092.1-P	Field mustard	cytosol	24.93	17.14
HORVU5Hr1G077580.3	Barley	plastid	9.09	16.4
OQU92181	Sorghum	endoplasmic reticulum	27.57	16.29
Bra037819.1-P	Field mustard	cytosol	26.1	11.15
Bra024393.1-P	Field mustard	cytosol	25.81	11.03

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra014439	EnsemblPlants:Bra014439.1	EnsemblPlants:Bra014439.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083
UniProt:M4DD71	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF52	SMART:SM00504
SUPFAM:SSF57850	UniParc:UPI0002543849	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:

Description

AT3G61390 (E=5e-071) | U-box domain-containing protein

Coordinates

chrA04:-:647815..649273

Molecular Weight (calculated)

39136.1 Da

IEP (calculated)

8.739

GRAVY (calculated)

-0.578

Length

341 amino acids

Sequence
(BLAST)

001: MVMDDKIYVA VTGRDLENKS SLVWAIQNSG GREFCIVYVQ KLRLCRKEKE RAHKSIDKYL NICRQMQVSA EKICIEMGSV EEGILHLISN REVKKLVMGA
101: AADRHYSMRM RDLQSKKSIY IHREAPATCH IWFTCKGYLI CSREARRIDH LYLEWASLDS SSQSETTKGT QSVPSSSMVK DDDRIQVSDA IKMAKQSENV
201: YINELKCKKE TEKALSKTKE ELEKMIRKLQ YKYSLSMGAV RRLRQEQEEL KIELGEVSKL KSNRKNHGPP QYFICPITQD VMEDPHVAAD GFTYEGEAIS
301: SWFERGHETS PMTNKSLPHT SLVPNLALRS AIQEWLQASS S

Best Arabidopsis Sequence Match ( AT3G61390.2 )
(BLAST)

001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI

Arabidopsis Description

PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.