Factsheet for Bra033243.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G01670.1	Thale cress	nucleus	39.15	55.34
Bra033242.1-P	Field mustard	nucleus	23.64	46.74
Bra000412.1-P	Field mustard	cytosol	25.39	46.29
Bra010318.1-P	Field mustard	cytosol	41.86	39.2
Bra014439.1-P	Field mustard	cytosol	21.12	31.96
Bra007601.1-P	Field mustard	cytosol	10.85	31.46
Bra003448.1-P	Field mustard	nucleus	25.0	30.42
Bra007600.1-P	Field mustard	cytosol	24.81	29.22
TraesCS1A01G207800.1	Wheat	cytosol	14.92	26.74
Bra039304.1-P	Field mustard	cytosol	13.76	26.69
TraesCS6D01G319000.1	Wheat	cytosol	15.89	26.54
TraesCS1B01G221500.1	Wheat	cytosol	15.31	26.51
Bra033244.1-P	Field mustard	cytosol	26.55	25.66
Bra014438.1-P	Field mustard	cytosol	13.76	25.54
Os10t0552400-01	Rice	cytosol	20.74	24.83
HORVU1Hr1G053230.7	Barley	cytosol	11.43	24.79
TraesCS1D01G211100.1	Wheat	cytosol	14.53	24.59
Bra004948.1-P	Field mustard	cytosol	12.98	23.59
TraesCS1D01G211200.1	Wheat	cytosol	17.83	22.77
HORVU5Hr1G077580.3	Barley	plastid	8.33	22.75
TraesCS1A01G207900.1	Wheat	cytosol	18.41	22.67
Os10t0548850-00	Rice	cytosol	17.44	22.22
HORVU1Hr1G053260.5	Barley	cytosol	17.25	21.98
TraesCS1B01G221900.1	Wheat	cytosol	14.73	21.78
Zm00001d029847_P001	Maize	cytosol	19.77	20.0
OQU92181	Sorghum	endoplasmic reticulum	20.16	18.02
Bra037092.1-P	Field mustard	cytosol	14.34	14.92
Bra024393.1-P	Field mustard	cytosol	18.99	12.28
Bra037819.1-P	Field mustard	cytosol	18.02	11.65

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra033243	EnsemblPlants:Bra033243.1	EnsemblPlants:Bra033243.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083
UniProt:M4EWQ8	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF52	SMART:SM00504
SUPFAM:SSF57850	UniParc:UPI000254532E	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT1G01670 (E=1e-109) | U-box domain-containing protein

Coordinates

chrA10:-:4713288..4716328

Molecular Weight (calculated)

59001.6 Da

IEP (calculated)

4.906

GRAVY (calculated)

-0.563

Length

516 amino acids

Sequence
(BLAST)

001: MLLTLDLAPL PPNCQPNRPP ANLPAHEIRR NVAGIDRREK SSLIEKIQRR VERITMAEAL IEDPVYVAVN KDVGESRSTL TWALRHLQFK KLYLLHVHLP
101: ISMNPTSEDQ SLLSLTNLFR PSLSFPFFVV WGIAASGLEQ SEIDAIQVSE LTSTYESLLK YHDICLHEGI IEQDVEIFCD VGDNVEEGIV NLIYENNIKK
201: LIIGAAADSR YSEGMVNITS RKAKYVSSHA PHCCKIWLVC NGNLIQTREG RFDLEGSSHS SSESLASLHD LDSALIPYED VVRAEPDSES HALSSSPEDQ
301: SARGSAATYY EEQRRRLEIE ELKRELEQHD KMNREREEAL SSSFGVTQML YSEEVRRRRE AEEELNRARA EIKDMKRVQK ELEEQLYIDC PRRLDMAEKE
401: RDEAIKKTEE LLRNLYMEKG ESSSDSPSSA SQWSVSNEPP PYFICPISKE IMQNPHVAAD GYTYEANEFK IWLSHGGEKS PMTNLRLENH NLTPNLALRS
501: AINEWLQQHP YFFDLP

Best Arabidopsis Sequence Match ( AT1G01670.1 )
(BLAST)

001: MTPSSSGLEQ SEIDAIQELE QTSRNDTLLK YHDICIDEGV IEQDVDMSCF SANSVGEWIV ELIYQNNIKK LIMGATADSH YSEGMVHITP TKADYVIQHA
101: PHCCNIWLVC NGNLIQTREG RFEHAGSAYS SSSSLHSIDS ALIPYGGAGR AERVTEPHAL SSSEEQSARG IEKMYYEEQR RRLEIEELKR EKEQRDKMRR
201: VREEALSSSS GVTKILYNEE VMRRREVEAE LNRAKAEIED MKRVQIELKE QHYADCRLLE KERDEAIKTT EELLRALEKG ESSIPLQWSV SIEPPQCFIC
301: PISKDIMQNP HVAADGYTYE ADEFRRWLNH GGEKSPMTNL RLENRNLIPN LVLRSAIKDW LQQHP

Arabidopsis Description

PUB56U-box domain-containing protein 56 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXQ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.