Factsheet for Bra007600.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48923	Canola	cytosol	96.35	96.35
Bra003448.1-P	Field mustard	nucleus	67.81	70.05
Bra014439.1-P	Field mustard	cytosol	51.83	66.57
AT3G61390.2	Thale cress	cytosol	62.56	62.99
Bra007601.1-P	Field mustard	cytosol	15.75	38.76
Bra000412.1-P	Field mustard	cytosol	22.15	34.28
Bra014438.1-P	Field mustard	cytosol	21.46	33.81
Bra033242.1-P	Field mustard	nucleus	19.63	32.95
TraesCS6D01G319000.1	Wheat	cytosol	22.6	32.04
Bra039304.1-P	Field mustard	cytosol	19.18	31.58
Bra004948.1-P	Field mustard	cytosol	20.09	30.99
TraesCS1A01G207800.1	Wheat	cytosol	17.35	26.39
Os10t0552400-01	Rice	cytosol	25.57	25.99
Bra033244.1-P	Field mustard	cytosol	31.51	25.84
HORVU1Hr1G053230.7	Barley	cytosol	13.7	25.21
TraesCS1B01G221500.1	Wheat	cytosol	17.12	25.17
TraesCS1D01G211100.1	Wheat	cytosol	17.35	24.92
Bra033243.1-P	Field mustard	cytosol, plastid	29.22	24.81
Os10t0548850-00	Rice	cytosol	22.6	24.44
Zm00001d029847_P001	Maize	cytosol	27.17	23.33
TraesCS1D01G211200.1	Wheat	cytosol	21.46	23.27
TraesCS1A01G207900.1	Wheat	cytosol	22.15	23.15
HORVU1Hr1G053260.5	Barley	cytosol	21.23	22.96
TraesCS1B01G221900.1	Wheat	cytosol	18.04	22.64
Bra010318.1-P	Field mustard	cytosol	26.48	21.05
OQU92181	Sorghum	endoplasmic reticulum	26.94	20.45
HORVU5Hr1G077580.3	Barley	plastid	8.68	20.11
Bra037092.1-P	Field mustard	cytosol	22.15	19.56
Bra037819.1-P	Field mustard	cytosol	24.89	13.66
Bra024393.1-P	Field mustard	cytosol	24.66	13.53

Protein Annotations

Gene3D:3.30.40.10	Gene3D:3.40.50.620	MapMan:35.1	EnsemblPlantsGene:Bra007600	EnsemblPlants:Bra007600.1	EnsemblPlants:Bra007600.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR013083	InterPro:IPR014729	UniProt:M4CTQ6	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR27003
PANTHER:PTHR27003:SF52	InterPro:Rossmann-like_a/b/a_fold	SMART:SM00504	SUPFAM:SSF52402	SUPFAM:SSF57850	UniParc:UPI00025429B8
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

AT3G61390 (E=1e-163) | U-box domain-containing protein

Coordinates

chrA09:+:29962847..29964706

Molecular Weight (calculated)

49967.8 Da

IEP (calculated)

8.254

GRAVY (calculated)

-0.643

Length

438 amino acids

Sequence
(BLAST)

001: MTLKIPIQET VKLVGSLRLC GSDRSEPVVV SKTEMVMDEK VYVAVVARDL ESKSSLVWAI QNTRGREFCI VYVHQPMNIS APGEMFHEQK LRLYRKEKEK
101: AHNSLDKYLN ICRQMHVNAE KIYMEMDSVE EGILQLISQR GVKKLVMGAA ADRNYTMSMR DLKSKKAIYI SREAPDTCHI WFTCNGYLIC TREAARRDNL
201: NVEGTSSSSL AQSEINKGTE SVASSSMAKD DVQIQVALIE AATSNRETRL EVSKRKEAEK SAIDAIKKAK ESENGYLNEL KRRKETEKSL KEAKEEMEKM
301: RSEAETRIAE SNTVITNLQG KYSLSMKVLR RLRDEQEELK REISEVSKLK SKREKEEASP SKDLEPPQYF ICPITQEVME DPYVAADGFT YEGEAIRGWF
401: NRGHETSPMT NKRLHHTSLV PNLALRSAIQ EWFQASSS

Best Arabidopsis Sequence Match ( AT3G61390.2 )
(BLAST)

001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI

Arabidopsis Description

PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.