Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G207800.1 | Wheat | cytosol | 80.98 | 85.76 |
| TraesCS1B01G221500.1 | Wheat | cytosol | 83.61 | 85.57 |
| HORVU1Hr1G053230.7 | Barley | cytosol | 51.8 | 66.39 |
| TraesCS1D01G211200.1 | Wheat | cytosol | 62.95 | 47.52 |
| Os10t0552400-01 | Rice | cytosol | 56.07 | 39.68 |
| Zm00001d029847_P001 | Maize | cytosol | 55.74 | 33.33 |
| Bra007601.1-P | Field mustard | cytosol | 18.36 | 31.46 |
| OQU92181 | Sorghum | endoplasmic reticulum | 56.39 | 29.81 |
| CDY37075 | Canola | cytosol | 23.28 | 26.69 |
| Bra039304.1-P | Field mustard | cytosol | 23.28 | 26.69 |
| CDY27349 | Canola | cytosol | 22.3 | 25.56 |
| Bra014438.1-P | Field mustard | cytosol | 23.28 | 25.54 |
| CDX89114 | Canola | cytosol | 23.61 | 25.26 |
| CDY18888 | Canola | nucleus | 22.62 | 24.21 |
| CDX74775 | Canola | cytosol | 22.3 | 23.94 |
| Bra004948.1-P | Field mustard | cytosol | 21.97 | 23.59 |
| CDY42502 | Canola | cytosol | 20.66 | 23.08 |
| CDY48922 | Canola | cytosol | 20.98 | 21.99 |
| CDX71740 | Canola | cytosol | 19.34 | 21.77 |
| TraesCS6D01G319000.1 | Wheat | cytosol | 21.97 | 21.68 |
| CDX95679 | Canola | cytosol, extracellular, plastid | 8.85 | 20.93 |
| AT3G61410.3 | Thale cress | cytosol | 21.31 | 19.7 |
| Bra003448.1-P | Field mustard | nucleus | 26.89 | 19.34 |
| CDX71741 | Canola | nucleus | 25.25 | 19.06 |
| AT1G01680.1 | Thale cress | cytosol | 18.69 | 18.51 |
| CDY51567 | Canola | nucleus | 24.26 | 18.14 |
| Bra014439.1-P | Field mustard | cytosol | 20.0 | 17.89 |
| CDX89113 | Canola | cytosol | 20.0 | 17.89 |
| CDY42501 | Canola | cytosol | 19.67 | 17.6 |
| CDY48923 | Canola | cytosol | 24.92 | 17.35 |
| Bra007600.1-P | Field mustard | cytosol | 24.92 | 17.35 |
| CDX90051 | Canola | cytosol | 17.38 | 17.26 |
| AT2G45920.1 | Thale cress | cytosol | 22.62 | 17.25 |
| AT3G61390.2 | Thale cress | cytosol | 24.59 | 17.24 |
| CDY15161 | Canola | cytosol | 17.05 | 16.99 |
| Bra033242.1-P | Field mustard | nucleus | 13.77 | 16.09 |
| CDX83380 | Canola | cytosol | 14.75 | 15.9 |
| Bra000412.1-P | Field mustard | cytosol | 14.75 | 15.9 |
| Bra033243.1-P | Field mustard | cytosol, plastid | 24.59 | 14.53 |
| AT1G01670.1 | Thale cress | nucleus | 17.38 | 14.52 |
| Bra033244.1-P | Field mustard | cytosol | 23.93 | 13.67 |
| AT1G01660.2 | Thale cress | nucleus | 25.25 | 13.53 |
| CDX90050 | Canola | nucleus | 25.25 | 13.53 |
| CDY15162 | Canola | nucleus | 24.26 | 13.03 |
| Bra010318.1-P | Field mustard | cytosol | 21.31 | 11.8 |
| VIT_00s0772g00010.t01 | Wine grape | cytosol | 21.31 | 9.94 |
| KRH39466 | Soybean | cytosol | 22.95 | 8.75 |
| KRH74477 | Soybean | cytosol | 22.62 | 8.61 |
| CDY54713 | Canola | cytosol | 21.97 | 8.4 |
| Bra037819.1-P | Field mustard | cytosol | 21.97 | 8.4 |
| CDX81289 | Canola | cytosol | 21.97 | 8.39 |
| AT5G65500.2 | Thale cress | cytosol | 21.64 | 8.26 |
| KRG99475 | Soybean | cytosol | 21.31 | 8.15 |
| Bra024393.1-P | Field mustard | cytosol | 20.98 | 8.02 |
| CDY14575 | Canola | cytosol | 20.98 | 8.02 |
| CDY67215 | Canola | cytosol | 20.66 | 7.89 |
| Solyc11g010700.1.1 | Tomato | cytosol | 16.72 | 6.39 |
| PGSC0003DMT400041610 | Potato | cytosol | 4.59 | 2.69 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G211100.1 | EnsemblPlantsGene:TraesCS1D01G211100 | Gene3D:3.40.50.620 | InterPro:IPR014729 | InterPro:Rossmann-like_a/b/a_fold | ncoils:Coil |
| PANTHER:PTHR27003 | PANTHER:PTHR27003:SF52 | SEG:seg | SUPFAM:SSF52402 | TIGR:cd01989 | MapMan:35.1 |
Description
No Description!
Coordinates
chr1D:+:296991025..296993151
Molecular Weight (calculated)
34049.7 Da
IEP (calculated)
5.613
GRAVY (calculated)
-0.465
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAAAAAEE EEKVFVAVPA EPRAGQSTLA WALRHLHGGA ATTIVVMHVH VPAQMIPIMG VKFHADKLSP EPVRVFRRAE RERADEMLDD YIHQCSQIKV
101: KCEKLVVGKE DAASGLVELI RLHGITKLVI AAAADRHYSR KLDKPVSKTA TEIMQRADPS CKIWFVCKEQ LVCTRDKEVQ IAPSTVAAPL LPNLGHEVLD
201: LQSPQEEGDT EMEPSFDDEL EEARKAVEEL MRRALKESCR RQKAEEETAA SLHKAQEHEE LYLEEVKKRE ELEAALARAD GEIARLRQAI QQKHDRGGSH
301: GEIDA
101: KCEKLVVGKE DAASGLVELI RLHGITKLVI AAAADRHYSR KLDKPVSKTA TEIMQRADPS CKIWFVCKEQ LVCTRDKEVQ IAPSTVAAPL LPNLGHEVLD
201: LQSPQEEGDT EMEPSFDDEL EEARKAVEEL MRRALKESCR RQKAEEETAA SLHKAQEHEE LYLEEVKKRE ELEAALARAD GEIARLRQAI QQKHDRGGSH
301: GEIDA
001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGYN GGSTCSS
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGYN GGSTCSS
Arabidopsis Description
PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.