Factsheet for Bra000412.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83380	Canola	cytosol	100.0	100.0
Bra033242.1-P	Field mustard	nucleus	56.18	60.92
AT1G01680.1	Thale cress	cytosol	60.42	55.52
TraesCS6D01G319000.1	Wheat	cytosol	31.45	28.8
Bra007601.1-P	Field mustard	cytosol	18.02	28.65
Bra014439.1-P	Field mustard	cytosol	32.16	26.69
Bra033243.1-P	Field mustard	cytosol, plastid	46.29	25.39
Bra039304.1-P	Field mustard	cytosol	22.61	24.06
Bra004948.1-P	Field mustard	cytosol	24.03	23.94
Bra014438.1-P	Field mustard	cytosol	22.97	23.38
Bra003448.1-P	Field mustard	nucleus	34.98	23.35
Bra010318.1-P	Field mustard	cytosol	44.52	22.87
Bra007600.1-P	Field mustard	cytosol	34.28	22.15
HORVU1Hr1G053230.7	Barley	cytosol	17.67	21.01
Bra033244.1-P	Field mustard	cytosol	33.22	17.6
Os10t0552400-01	Rice	cytosol	25.44	16.71
Os10t0548850-00	Rice	cytosol	23.32	16.3
TraesCS1B01G221500.1	Wheat	cytosol	16.96	16.11
HORVU5Hr1G077580.3	Barley	plastid	10.6	15.87
Zm00001d029847_P001	Maize	cytosol	28.27	15.69
TraesCS1D01G211200.1	Wheat	cytosol	22.26	15.59
TraesCS1A01G207800.1	Wheat	cytosol	15.55	15.28
TraesCS1A01G207900.1	Wheat	cytosol	22.26	15.04
TraesCS1D01G211100.1	Wheat	cytosol	15.9	14.75
HORVU1Hr1G053260.5	Barley	cytosol	20.49	14.32
TraesCS1B01G221900.1	Wheat	cytosol	16.96	13.75
OQU92181	Sorghum	endoplasmic reticulum	27.92	13.69
Bra037092.1-P	Field mustard	cytosol	18.02	10.28
Bra037819.1-P	Field mustard	cytosol	26.86	9.52
Bra024393.1-P	Field mustard	cytosol	25.8	9.15

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra000412	EnsemblPlants:Bra000412.1	EnsemblPlants:Bra000412.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083
UniProt:M4C884	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR27003	PANTHER:PTHR27003:SF52	SMART:SM00504
SUPFAM:SSF57850	UniParc:UPI000253FEAB	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:

Description

AT1G01680 (E=5e-071) | U-box domain-containing protein

Coordinates

chrA03:-:10990262..10992094

Molecular Weight (calculated)

31860.5 Da

IEP (calculated)

7.273

GRAVY (calculated)

-0.591

Length

283 amino acids

Sequence
(BLAST)

001: MGETLYSNVT YVAVNQDFRE SKLNLLWTLK TLRVKKLCLL QVHIPFSLNP SSCGLDESEI NAIQDSELKT SYDSLYKYRD ICTNEGVNEK DVGISLVSGY
101: GVGEEIVKLI NQNNIKKLVM GAAADPHYSR GMSITSRKAE YVSQHAPTRC KIWFICKGKL IKTREGSFDL GNPSDSFTEL HTSTQNPNKG NDPDKDHSVS
201: NGSEADCAPE DYLCPISKDI MRDPHVAADG FTYEAKNIRY WLNIGNNTSP NTGARLAHRD LTPNYTLRSL IKDWLQHHPN YKH

Best Arabidopsis Sequence Match ( AT1G01680.1 )
(BLAST)

001: MEDAIYVAVN QDVRESKKTL LWALKNLQVK KIFLLHVHLP FSLTTSSSRL EQSEIDAIQD SELNTSVNSL YKYRDICINK GVNEKDVDTS MISGHDVGEG
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR

Arabidopsis Description

PUB54U-box domain-containing protein 54 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.