Factsheet for Bra037092.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08273	Canola	cytosol	99.6	99.6
AT1G56030.1	Thale cress	cytosol	27.02	34.27
AT1G56040.1	Thale cress	cytosol	27.42	32.38
Bra014439.1-P	Field mustard	cytosol	17.14	24.93
Bra007600.1-P	Field mustard	cytosol	19.56	22.15
Bra003448.1-P	Field mustard	nucleus	17.74	20.75
Bra033242.1-P	Field mustard	nucleus	10.28	19.54
Bra000412.1-P	Field mustard	cytosol	10.28	18.02
Bra033244.1-P	Field mustard	cytosol	19.15	17.79
Bra033243.1-P	Field mustard	cytosol, plastid	14.92	14.34
Bra010318.1-P	Field mustard	cytosol	13.91	12.52
Bra024393.1-P	Field mustard	cytosol	19.15	11.9
Bra037819.1-P	Field mustard	cytosol	18.55	11.53
Bra014438.1-P	Field mustard	cytosol	6.25	11.15
Bra039304.1-P	Field mustard	cytosol	5.24	9.77
Bra004948.1-P	Field mustard	cytosol	5.44	9.51
Bra007601.1-P	Field mustard	cytosol	2.62	7.3

Protein Annotations

Gene3D:1.25.40.180	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra037092	EnsemblPlants:Bra037092.1
EnsemblPlants:Bra037092.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083
InterPro:IPR016021	UniProt:M4F7N1	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02854	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	SMART:SM00504	SMART:SM00543	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI00025475E3	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:

Description

AT1G56040 (E=7e-174) | binding / protein binding / ubiquitin-protein ligase

Coordinates

chrA05:+:10014188..10016162

Molecular Weight (calculated)

57743.7 Da

IEP (calculated)

4.969

GRAVY (calculated)

-0.587

Length

496 amino acids

Sequence
(BLAST)

001: MSKMNSQTSY GVVGNPNEEK RVIEKARSLL NWLTERNFDK IKDEIVQTII RASPSAFVIK SLVCFILDMA MVDSTANVLF ARLSVHLFQS LPPFPSADRH
101: GEITTFERLF LCKCRMELEH SSPETDRHAP LVYVDESDCW RFIKTVRLLA EIFKNRMLSQ TTRQSIIQVL MNPIFPPERN TDSMNCFLSF VGVLADFKFC
201: DENFKQLVQN SRAVELESSY NEQVTLRKEA EDALARNEGE LDLMKRLLES YKEDKCKLHL HAQGLEQEYQ NESKLRKETE CALAIERESI AKVRLRLETL
301: ENEHNNLRLK AEELESNYTD ELILRKESEV SLDKERNELE AMTQVFETCK IEQENLTSQV RTWLDKYDQE LSVRKETEDS LSRQKEELEI VKGLLEAYNQ
401: EADAMREERD SALQTVQELT RKHLEERQPP PSFYCPITQE VMKDPHFAAD GFTYEAEAIK KWFSTGHETS PMTNLQLPHR NLVPNRALRS AIQDLI

Best Arabidopsis Sequence Match ( AT1G56040.1 )
(BLAST)

001: MVENSYVLFA RLCVELFHEL PPLPSDESHG DITTFERLFL RKCRIELENA SPKTEHLPLV YVDETNYYRF IKTVRVLAEV YKNSKITETT RKSMIQVLMN
101: PILPPERITD AMNLFRSIIG KLADFHFSDE KFNQLVRSSR VVELEGNYNE EVKLRKEAED ALAMKKEDVE MMEQLLESYK EEQGKLQLQA KALEHKLEAE
201: LRHRKETETL LAIERDRIEK VKIQLETVEN EIDNTRLKAE EFERKYEGEM ILRRESEIAL EKEKKELEEV KLKLETYERE QENLSSEVRT WQDKYEQESS
301: LRKLSEYALS REQEELQIVK GLLEFYNGEA DAMREERDKA LKTAKEQMEK RQPPSSFFCP ITQEVMKDPH FAADGFTYEA ESIRKWLSTG HQTSPMTNLR
401: LSHLTLVPNR ALRSAIEELV

Arabidopsis Description

PUB58Putative U-box domain-containing protein 58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.