Factsheet for Bra033244.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90050	Canola	nucleus	88.02	82.6
CDY15162	Canola	nucleus	83.52	78.52
AT1G01660.2	Thale cress	nucleus	82.96	77.86
Bra014439.1-P	Field mustard	cytosol	22.47	35.19
Bra000412.1-P	Field mustard	cytosol	17.6	33.22
Bra033242.1-P	Field mustard	nucleus	15.92	32.57
Bra003448.1-P	Field mustard	nucleus	25.09	31.6
Bra007600.1-P	Field mustard	cytosol	25.84	31.51
TraesCS6D01G319000.1	Wheat	cytosol	16.48	28.48
Os10t0552400-01	Rice	cytosol	22.47	27.84
Bra033243.1-P	Field mustard	cytosol, plastid	25.66	26.55
TraesCS1A01G207800.1	Wheat	cytosol	13.67	25.35
Bra007601.1-P	Field mustard	cytosol	8.43	25.28
Os10t0548850-00	Rice	cytosol	18.91	24.94
TraesCS1B01G221500.1	Wheat	cytosol	13.67	24.5
Bra010318.1-P	Field mustard	cytosol	24.91	24.14
TraesCS1D01G211100.1	Wheat	cytosol	13.67	23.93
TraesCS1D01G211200.1	Wheat	cytosol	17.98	23.76
TraesCS1A01G207900.1	Wheat	cytosol	18.54	23.63
Zm00001d029847_P001	Maize	cytosol	21.72	22.75
Bra039304.1-P	Field mustard	cytosol	11.05	22.18
HORVU1Hr1G053260.5	Barley	cytosol	16.67	21.98
Bra004948.1-P	Field mustard	cytosol	11.61	21.83
TraesCS1B01G221900.1	Wheat	cytosol	14.23	21.78
Bra014438.1-P	Field mustard	cytosol	11.24	21.58
HORVU1Hr1G053230.7	Barley	cytosol	9.55	21.43
Bra037092.1-P	Field mustard	cytosol	17.79	19.15
HORVU5Hr1G077580.3	Barley	plastid	6.74	19.05
OQU92181	Sorghum	endoplasmic reticulum	20.22	18.72
Bra024393.1-P	Field mustard	cytosol	22.66	15.16
Bra037819.1-P	Field mustard	cytosol	21.91	14.66

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra033244	EnsemblPlants:Bra033244.1	EnsemblPlants:Bra033244.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083
UniProt:M4EWQ9	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	SMART:SM00504
SUPFAM:SSF57850	UniParc:UPI000254532D	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT1G01660 (E=1e-174) | U-box domain-containing protein

Coordinates

chrA10:-:4710322..4712952

Molecular Weight (calculated)

62212.5 Da

IEP (calculated)

4.972

GRAVY (calculated)

-0.892

Length

534 amino acids

Sequence
(BLAST)

001: MAELMAMGDD VVHVAVKNDV KESRSTLVWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL EAIMYETLHD YFDICQQEGV NEDDIYISCI EMNDVKQGIL
101: ELIHESKIKK LVMGAASDHH YSEEANLEDR VDETEAEAGQ WKPKLYSSAS PKCSAELVSA IVAYIDTRRD RDMLEPTSSE DQSESDRNDQ LYRQLKQALI
201: EVEESKREAY EECVRRFKAE NTAVEAIRKA REYEAMFNEE TRLRKEGKEA LAKQKKMVEK TKQERDDALI IILNGRKLYS EEVRRRVEAE EMLGKEKEEH
301: ERTKKELEEV RVIVQDGMKL YNEQLRQRKE MEESVKRQEE ELEKTKKEKE EACLISKNLM QLYEDEVRQR KETEELVKRR REEVEKVRKE KEEACSVGQN
401: FMRLYEEEAR RRKGTEEELS KVAAEKDAAS SVCSDILLLL QSYTRRHGIP SGFSDEDSLT RQPPSYFICP ISQEVMREPR VAADGFTYEA ETLKEWLDNG
501: HETSPMTNLK LTHNNLVPNH ALRSAIQEWL QRNS

Best Arabidopsis Sequence Match ( AT1G01660.2 )
(BLAST)

001: MAELMAMGND VVHVAVKSDV RESRSTLLWA LRNLGAKKVC ILHVYQPKTA SPAARKLEEL EAIMYETLHD YFDFCQQEGV NEDDIYISCI EMNDVKQGIL
101: ELIHESKIKK LVMGAASDHH YSEKMFDLKS RKAKYVYQHA PSSCEVMFMC DGHLIYTKEA NLEDCMGETE SEAGQSKPKL YSSASPKCSA ELVSAIVAYI
201: DTRRDRDMLE PNASEDQSES DRNDQLYRQL KQALMEVEES KREAYEECVR RFKAENTAVE AIRSAREYEA MYNEEAKLRK EGKEALAKQR KMVEKTKQER
301: DDALIIILNG RKLYNEELRR RVEAEEMLGK EKEEHERTKK EIEEVRAIVQ DGMQLYNEQL RHRKEMEESM KRQEEELEKT KKEKEEACMI SKNLMQLYED
401: EVRQRKEAEE LVKRRREELE KVKKEKEEAC SVGQNFMRLY EEEARRRKGT EEELSKVAAE KDAASSVCSE ILLLLQSYTR RHGTPSGFSD EDSVTRQPPS
501: YFICPISQEV MREPRVAADG FTYEAESLRE WLDNGHETSP MTNLKLAHNN LVPNHALRSA IQEWLQRNS

Arabidopsis Description

RING/U-box superfamily protein [Source:TAIR;Acc:AT1G01660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.