Factsheet for Bra033242.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90051	Canola	cytosol	97.32	82.74
Bra000412.1-P	Field mustard	cytosol	60.92	56.18
AT1G01680.1	Thale cress	cytosol	58.62	49.68
Bra014439.1-P	Field mustard	cytosol	32.95	25.22
TraesCS6D01G319000.1	Wheat	cytosol	28.35	23.95
Bra033243.1-P	Field mustard	cytosol, plastid	46.74	23.64
Bra007601.1-P	Field mustard	cytosol	15.33	22.47
Bra010318.1-P	Field mustard	cytosol	42.53	20.15
Bra039304.1-P	Field mustard	cytosol	20.31	19.92
Bra003448.1-P	Field mustard	nucleus	32.18	19.81
Bra007600.1-P	Field mustard	cytosol	32.95	19.63
Bra014438.1-P	Field mustard	cytosol	20.69	19.42
Bra004948.1-P	Field mustard	cytosol	21.07	19.37
Os10t0552400-01	Rice	cytosol	28.74	17.4
HORVU1Hr1G053230.7	Barley	cytosol	15.71	17.23
Bra033244.1-P	Field mustard	cytosol	32.57	15.92
TraesCS1D01G211200.1	Wheat	cytosol	23.37	15.1
TraesCS1A01G207900.1	Wheat	cytosol	24.14	15.04
Os10t0548850-00	Rice	cytosol	22.99	14.81
Zm00001d029847_P001	Maize	cytosol	28.74	14.71
TraesCS1B01G221500.1	Wheat	cytosol	16.48	14.43
HORVU1Hr1G053260.5	Barley	cytosol	22.22	14.32
TraesCS1A01G207800.1	Wheat	cytosol	15.71	14.24
TraesCS1D01G211100.1	Wheat	cytosol	16.09	13.77
TraesCS1B01G221900.1	Wheat	cytosol	17.24	12.89
OQU92181	Sorghum	endoplasmic reticulum	27.59	12.48
Bra037092.1-P	Field mustard	cytosol	19.54	10.28
HORVU5Hr1G077580.3	Barley	plastid	6.9	9.52
Bra037819.1-P	Field mustard	cytosol	28.74	9.4
Bra024393.1-P	Field mustard	cytosol	27.97	9.15

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra033242	EnsemblPlants:Bra033242.1	EnsemblPlants:Bra033242.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	UniProt:M4EWQ7
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	SMART:SM00504	SUPFAM:SSF57850
UniParc:UPI000254532F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT1G01680 (E=5e-082) | U-box domain-containing protein

Coordinates

chrA10:-:4716665..4718110

Molecular Weight (calculated)

29298.1 Da

IEP (calculated)

5.401

GRAVY (calculated)

-0.834

Length

261 amino acids

Sequence
(BLAST)

001: MVYNSACGLD ESEINAIQES ELKSSYDSLH KYRDLCTNKG VDEEDVDISL ISGYGVGEGI VELIYQNNIK KLVMGAAADP HYSRGMSITS RKTEYVSQHA
101: PHCCKMWFIC KGKLIQKKEG SFGIGNSSDS FSEFDGFAQK PSEGRGRDDG ETDSKHGGIK KTDEEPERED EETKRKDSEA DASPCAPENF ICPISMEIMR
201: DPHVAADGFT YEEKEIRTWL NGGNDKSPIT GARLGHRHLT PNYTLRSLIK DWLHQHPNYK H

Best Arabidopsis Sequence Match ( AT1G01680.1 )
(BLAST)

001: MEDAIYVAVN QDVRESKKTL LWALKNLQVK KIFLLHVHLP FSLTTSSSRL EQSEIDAIQD SELNTSVNSL YKYRDICINK GVNEKDVDTS MISGHDVGEG
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR

Arabidopsis Description

PUB54U-box domain-containing protein 54 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.