Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033242.1-P | Field mustard | nucleus | 82.74 | 97.32 |
| CDY15161 | Canola | cytosol | 78.83 | 79.08 |
| CDX95679 | Canola | cytosol, extracellular, plastid | 30.62 | 72.87 |
| CDX83380 | Canola | cytosol | 63.52 | 68.9 |
| AT1G01680.1 | Thale cress | cytosol | 61.24 | 61.04 |
| CDY58794 | Canola | nucleus | 16.94 | 31.9 |
| CDX89113 | Canola | cytosol | 32.25 | 29.03 |
| CDY42501 | Canola | cytosol | 30.94 | 27.86 |
| CDY18888 | Canola | nucleus | 24.43 | 26.32 |
| TraesCS6D01G319000.1 | Wheat | cytosol | 26.38 | 26.21 |
| CDX74775 | Canola | cytosol | 23.45 | 25.35 |
| CDY37075 | Canola | cytosol | 21.82 | 25.19 |
| CDY27349 | Canola | cytosol | 21.17 | 24.44 |
| CDY51567 | Canola | nucleus | 31.6 | 23.77 |
| CDX89114 | Canola | cytosol | 21.82 | 23.51 |
| CDY48923 | Canola | cytosol | 32.25 | 22.6 |
| CDY42502 | Canola | cytosol | 19.87 | 22.34 |
| CDY48922 | Canola | cytosol | 21.17 | 22.34 |
| HORVU1Hr1G053230.7 | Barley | cytosol | 17.26 | 22.27 |
| CDX71740 | Canola | cytosol | 19.22 | 21.77 |
| CDX90050 | Canola | nucleus | 39.09 | 21.09 |
| CDY15162 | Canola | nucleus | 38.11 | 20.6 |
| Os10t0552400-01 | Rice | cytosol | 27.36 | 19.49 |
| HORVU5Hr1G077580.3 | Barley | plastid | 11.4 | 18.52 |
| TraesCS1B01G221500.1 | Wheat | cytosol | 17.92 | 18.46 |
| TraesCS1A01G207800.1 | Wheat | cytosol | 16.94 | 18.06 |
| Os10t0548850-00 | Rice | cytosol | 23.45 | 17.78 |
| CDX71741 | Canola | nucleus | 23.13 | 17.57 |
| TraesCS1D01G211200.1 | Wheat | cytosol | 23.13 | 17.57 |
| TraesCS1A01G207900.1 | Wheat | cytosol | 23.78 | 17.42 |
| TraesCS1D01G211100.1 | Wheat | cytosol | 17.26 | 17.38 |
| Zm00001d029847_P001 | Maize | cytosol | 28.66 | 17.25 |
| HORVU1Hr1G053260.5 | Barley | cytosol | 21.82 | 16.54 |
| TraesCS1B01G221900.1 | Wheat | cytosol | 17.92 | 15.76 |
| OQU92181 | Sorghum | endoplasmic reticulum | 26.71 | 14.21 |
| CDY08273 | Canola | cytosol | 18.57 | 11.49 |
| CDY26075 | Canola | cytosol | 18.57 | 11.35 |
| CDY67215 | Canola | cytosol | 27.36 | 10.53 |
| CDY54713 | Canola | cytosol | 27.04 | 10.4 |
| CDY14575 | Canola | cytosol | 26.71 | 10.28 |
| CDX81289 | Canola | cytosol | 26.38 | 10.14 |
Protein Annotations
| Gene3D:3.30.40.10 | Gene3D:3.40.50.620 | MapMan:35.1 | GO:A0A078DLD1 | EnsemblPlants:CDX90051 | ProteinID:CDX90051 |
| ProteinID:CDX90051.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00150555001 |
| InterPro:IPR003613 | InterPro:IPR013083 | InterPro:IPR014729 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR27003 |
| PANTHER:PTHR27003:SF52 | InterPro:Rossmann-like_a/b/a_fold | SMART:SM00504 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE5A37 |
| InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
BnaA10g00310D
Coordinates
chrLK031861:-:1432918..1435216
Molecular Weight (calculated)
34452.4 Da
IEP (calculated)
5.902
GRAVY (calculated)
-0.689
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MGETLHNDVI YVAVNQDVRE SKSTLLWTLK TLPVKKLCLL HVHIPFSLNS SSCGLDESEI NAIQESELKS SYDSLHKYRD LCTNKGVDEE DVDISLISGY
101: GVGEGIVELI YQNNIKKLVM GAAADPHYSR GMSITSRKAE YVSQHAPHCC KMWFICKGKL IQKKEGSFGI GNSSDSFSEF DGFAQKPSEG RGRDDGETDS
201: KQGGIKKTDE EPEREDEETK RKDSEADASP CAPENFICPI SMEIMRDPHV AADGFTYEEK EIRTWLNGGN DKSPITGARL GHRHLTPNYT LRSLIKDWLH
301: QHPNYKH
101: GVGEGIVELI YQNNIKKLVM GAAADPHYSR GMSITSRKAE YVSQHAPHCC KMWFICKGKL IQKKEGSFGI GNSSDSFSEF DGFAQKPSEG RGRDDGETDS
201: KQGGIKKTDE EPEREDEETK RKDSEADASP CAPENFICPI SMEIMRDPHV AADGFTYEEK EIRTWLNGGN DKSPITGARL GHRHLTPNYT LRSLIKDWLH
301: QHPNYKH
001: MEDAIYVAVN QDVRESKKTL LWALKNLQVK KIFLLHVHLP FSLTTSSSRL EQSEIDAIQD SELNTSVNSL YKYRDICINK GVNEKDVDTS MISGHDVGEG
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR
Arabidopsis Description
PUB54U-box domain-containing protein 54 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.