Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014439.1-P | Field mustard | cytosol | 98.83 | 98.83 |
| CDY42501 | Canola | cytosol | 90.91 | 90.91 |
| AT3G61390.2 | Thale cress | cytosol | 68.04 | 53.33 |
| CDY48923 | Canola | cytosol | 67.74 | 52.74 |
| CDY51567 | Canola | nucleus | 58.94 | 49.26 |
| CDX71741 | Canola | nucleus | 51.91 | 43.81 |
| CDY58794 | Canola | nucleus | 20.82 | 43.56 |
| CDX83380 | Canola | cytosol | 26.98 | 32.51 |
| CDX90051 | Canola | cytosol | 29.03 | 32.25 |
| CDY15161 | Canola | cytosol | 28.45 | 31.7 |
| TraesCS6D01G319000.1 | Wheat | cytosol | 27.57 | 30.42 |
| CDX89114 | Canola | cytosol | 24.63 | 29.47 |
| CDX74775 | Canola | cytosol | 23.75 | 28.52 |
| CDY18888 | Canola | nucleus | 23.75 | 28.42 |
| CDY42502 | Canola | cytosol | 21.99 | 27.47 |
| CDY27349 | Canola | cytosol | 20.53 | 26.32 |
| CDY37075 | Canola | cytosol | 20.53 | 26.32 |
| CDY48922 | Canola | cytosol | 21.99 | 25.77 |
| CDX95679 | Canola | cytosol, extracellular, plastid | 9.68 | 25.58 |
| CDX71740 | Canola | cytosol | 19.35 | 24.35 |
| CDY15162 | Canola | nucleus | 39.88 | 23.94 |
| CDX90050 | Canola | nucleus | 39.3 | 23.55 |
| HORVU1Hr1G053230.7 | Barley | cytosol | 16.13 | 23.11 |
| Os10t0552400-01 | Rice | cytosol | 28.74 | 22.74 |
| Os10t0548850-00 | Rice | cytosol | 26.98 | 22.72 |
| TraesCS1A01G207800.1 | Wheat | cytosol | 18.18 | 21.53 |
| TraesCS1B01G221500.1 | Wheat | cytosol | 17.89 | 20.47 |
| Zm00001d029847_P001 | Maize | cytosol | 30.21 | 20.2 |
| TraesCS1D01G211200.1 | Wheat | cytosol | 23.75 | 20.05 |
| TraesCS1D01G211100.1 | Wheat | cytosol | 17.89 | 20.0 |
| TraesCS1A01G207900.1 | Wheat | cytosol | 24.05 | 19.57 |
| TraesCS1B01G221900.1 | Wheat | cytosol | 19.65 | 19.2 |
| HORVU1Hr1G053260.5 | Barley | cytosol | 21.7 | 18.27 |
| CDY26075 | Canola | cytosol | 25.81 | 17.53 |
| CDY08273 | Canola | cytosol | 25.22 | 17.34 |
| HORVU5Hr1G077580.3 | Barley | plastid | 9.09 | 16.4 |
| OQU92181 | Sorghum | endoplasmic reticulum | 27.57 | 16.29 |
| CDY54713 | Canola | cytosol | 26.98 | 11.53 |
| CDX81289 | Canola | cytosol | 26.1 | 11.14 |
| CDY67215 | Canola | cytosol | 25.81 | 11.03 |
| CDY14575 | Canola | cytosol | 25.81 | 11.03 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078DPJ4 | EnsemblPlants:CDX89113 | ProteinID:CDX89113 | ProteinID:CDX89113.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00149251001 |
| InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR27003 | PANTHER:PTHR27003:SF52 |
| SMART:SM00504 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EED845 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
Description
BnaA04g00730D
Coordinates
chrLK031857:+:1109136..1110591
Molecular Weight (calculated)
39323.3 Da
IEP (calculated)
8.877
GRAVY (calculated)
-0.617
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMDDKIYVA VTGRDLESKS SLVWAIQNSG GREFCIVYVQ KLRLCRKEKE RAHKSIDKYL NICRQMQVSA EKICIEMGSV EEGILHLISN REVKKLVMGA
101: AADRHYSMRM RDLQSKKSIY IHREAPATCH IWFTCKGYLI CSREARRRDH LYLEWASLDS SSQSETTKGT QSVPSSSMVK DDDRIQVSDA IKMAKQSENV
201: YINELKCKKE TEKALSKTKE ELEKMIRKLQ YKYSLSMEAV RRLRQEQEEL KIELREVSKL KSNRKNHGPP QYFICPITQD VMEDPHVAAD GFTYEGEAIS
301: SWFERGHETS PMTNKSLPHT SLVPNLALRS AIQEWLQASS S
101: AADRHYSMRM RDLQSKKSIY IHREAPATCH IWFTCKGYLI CSREARRRDH LYLEWASLDS SSQSETTKGT QSVPSSSMVK DDDRIQVSDA IKMAKQSENV
201: YINELKCKKE TEKALSKTKE ELEKMIRKLQ YKYSLSMEAV RRLRQEQEEL KIELREVSKL KSNRKNHGPP QYFICPITQD VMEDPHVAAD GFTYEGEAIS
301: SWFERGHETS PMTNKSLPHT SLVPNLALRS AIQEWLQASS S
001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI
Arabidopsis Description
PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.