CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08273	Canola	cytosol	88.84	89.92
AT1G56040.1	Thale cress	cytosol	30.88	36.9
AT1G56030.1	Thale cress	cytosol	27.29	35.04
CDY58794	Canola	nucleus	9.76	30.06
CDX89113	Canola	cytosol	17.53	25.81
CDY42501	Canola	cytosol	16.53	24.34
CDY48923	Canola	cytosol	18.92	21.69
CDY51567	Canola	nucleus	17.33	21.32
CDX90051	Canola	cytosol	11.35	18.57
CDY15161	Canola	cytosol	11.16	18.3
CDX83380	Canola	cytosol	10.16	18.02
CDY15162	Canola	nucleus	20.12	17.78
CDX90050	Canola	nucleus	19.72	17.4
CDX71741	Canola	nucleus	11.35	14.11
CDY42502	Canola	cytosol	6.57	12.09
CDY67215	Canola	cytosol	18.92	11.9
CDY14575	Canola	cytosol	18.73	11.78
CDY54713	Canola	cytosol	18.13	11.4
CDX81289	Canola	cytosol	17.93	11.26
CDX89114	Canola	cytosol	6.37	11.23
CDX71740	Canola	cytosol	5.58	10.33
CDX74775	Canola	cytosol	5.38	9.51
CDY27349	Canola	cytosol	4.78	9.02
CDY48922	Canola	cytosol	5.18	8.93
CDY18888	Canola	nucleus	4.98	8.77
CDY37075	Canola	cytosol	4.38	8.27
CDX95679	Canola	cytosol, extracellular, plastid	1.79	6.98

Protein Annotations

Gene3D:1.25.40.180	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078GI10	UniProt:A0A078GI10	InterPro:ARM-type_fold
EnsemblPlants:CDY26075	ProteinID:CDY26075	ProteinID:CDY26075.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00034691001	InterPro:IPR003613	InterPro:IPR013083	InterPro:IPR016021	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
PFAM:PF02854	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	SMART:SM00504
SMART:SM00543	SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EF2E88	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

BnaC06g11210DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078GI10]

Coordinates

chrLK032185:+:64389..66490

Molecular Weight (calculated)

58137.0 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.585

Length

502 amino acids

Sequence
(BLAST)

001: MDSRRSLAQM NSQTSYGVVG NSNEEKRVIE KARSLLNWLT ERNFDKIKDE IVQTIIRASP SAFVIKSLVC FILDMAMVDS TANVLSARLS VHLFHSLPPF
101: PTADCHGEIT TFERLFLCKC RMELEHSSPE TDRHAPLVYV DESDCWRFIK TVRLLAEIFK NRMLSQTTRQ SIIQVLMNPI LPPERNTDSM NCFLSFVGVL
201: ADFQFCDENF KQLVQNSRAV ELESSYNEQV TLRKEAEDAL ARNEGALDLM KRLLESYKED KCKLHLHAQG LEQKYQNESK LRRETECALA IERESIAKVR
301: LQLETLENEH NNLRLKAEEL ESNYTDELIL RKESEIALDK ERNELEAMTQ VFETCKIEQE NLTSQVRTWQ DKYDQELSVR KETEDSLSRQ KEELGIVKGL
401: LEAYNQEADA MREERDSALQ TVQELTRKHL EERQPPPSFY CPITQEVMKD PHFAADGFTY EAEAIDKWFS TGHDTSPMTN LKLPHRNLVP NRALRSAIQD
501: LS

Best Arabidopsis Sequence Match ( AT1G56040.1 )
(BLAST)

001: MVENSYVLFA RLCVELFHEL PPLPSDESHG DITTFERLFL RKCRIELENA SPKTEHLPLV YVDETNYYRF IKTVRVLAEV YKNSKITETT RKSMIQVLMN
101: PILPPERITD AMNLFRSIIG KLADFHFSDE KFNQLVRSSR VVELEGNYNE EVKLRKEAED ALAMKKEDVE MMEQLLESYK EEQGKLQLQA KALEHKLEAE
201: LRHRKETETL LAIERDRIEK VKIQLETVEN EIDNTRLKAE EFERKYEGEM ILRRESEIAL EKEKKELEEV KLKLETYERE QENLSSEVRT WQDKYEQESS
301: LRKLSEYALS REQEELQIVK GLLEFYNGEA DAMREERDKA LKTAKEQMEK RQPPSSFFCP ITQEVMKDPH FAADGFTYEA ESIRKWLSTG HQTSPMTNLR
401: LSHLTLVPNR ALRSAIEELV

Arabidopsis Description

PUB58Putative U-box domain-containing protein 58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.