Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G56030.1 | Thale cress | cytosol | 35.71 | 38.36 |
| CDY26075 | Canola | cytosol | 36.9 | 30.88 |
| Bra037092.1-P | Field mustard | cytosol | 32.38 | 27.42 |
| CDY08273 | Canola | cytosol | 32.38 | 27.42 |
| AT3G61390.2 | Thale cress | cytosol | 22.38 | 21.61 |
| AT2G45920.1 | Thale cress | cytosol | 20.0 | 21.0 |
| AT1G01680.1 | Thale cress | cytosol | 14.29 | 19.48 |
| AT1G01670.1 | Thale cress | nucleus | 15.95 | 18.36 |
| AT1G01660.2 | Thale cress | nucleus | 23.81 | 17.57 |
| AT3G61410.3 | Thale cress | cytosol | 10.48 | 13.33 |
| AT5G65500.2 | Thale cress | cytosol | 22.38 | 11.76 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:842055 | ProteinID:AAF02844.1 | ProteinID:AEE33334.2 | InterPro:ARM-type_fold |
| ArrayExpress:AT1G56040 | EnsemblPlantsGene:AT1G56040 | RefSeq:AT1G56040 | TAIR:AT1G56040 | RefSeq:AT1G56040-TAIR-G | EnsemblPlants:AT1G56040.1 |
| TAIR:AT1G56040.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR013083 | RefSeq:NP_176000.5 |
| PFAM:PF04564 | PO:PO:0020094 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF59 | UniProt:Q9SGT2 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00020B9E7B | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
PUB58Putative U-box domain-containing protein 58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGT2]
Coordinates
chr1:-:20960356..20961870
Molecular Weight (calculated)
49534.2 Da
IEP (calculated)
4.978
GRAVY (calculated)
-0.724
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MVENSYVLFA RLCVELFHEL PPLPSDESHG DITTFERLFL RKCRIELENA SPKTEHLPLV YVDETNYYRF IKTVRVLAEV YKNSKITETT RKSMIQVLMN
101: PILPPERITD AMNLFRSIIG KLADFHFSDE KFNQLVRSSR VVELEGNYNE EVKLRKEAED ALAMKKEDVE MMEQLLESYK EEQGKLQLQA KALEHKLEAE
201: LRHRKETETL LAIERDRIEK VKIQLETVEN EIDNTRLKAE EFERKYEGEM ILRRESEIAL EKEKKELEEV KLKLETYERE QENLSSEVRT WQDKYEQESS
301: LRKLSEYALS REQEELQIVK GLLEFYNGEA DAMREERDKA LKTAKEQMEK RQPPSSFFCP ITQEVMKDPH FAADGFTYEA ESIRKWLSTG HQTSPMTNLR
401: LSHLTLVPNR ALRSAIEELV
101: PILPPERITD AMNLFRSIIG KLADFHFSDE KFNQLVRSSR VVELEGNYNE EVKLRKEAED ALAMKKEDVE MMEQLLESYK EEQGKLQLQA KALEHKLEAE
201: LRHRKETETL LAIERDRIEK VKIQLETVEN EIDNTRLKAE EFERKYEGEM ILRRESEIAL EKEKKELEEV KLKLETYERE QENLSSEVRT WQDKYEQESS
301: LRKLSEYALS REQEELQIVK GLLEFYNGEA DAMREERDKA LKTAKEQMEK RQPPSSFFCP ITQEVMKDPH FAADGFTYEA ESIRKWLSTG HQTSPMTNLR
401: LSHLTLVPNR ALRSAIEELV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.