Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G56040.1 | Thale cress | cytosol | 38.36 | 35.71 |
| CDY26075 | Canola | cytosol | 35.04 | 27.29 |
| Bra037092.1-P | Field mustard | cytosol | 34.27 | 27.02 |
| CDY08273 | Canola | cytosol | 34.02 | 26.81 |
| AT2G45920.1 | Thale cress | cytosol | 19.44 | 19.0 |
| AT3G61390.2 | Thale cress | cytosol | 20.46 | 18.39 |
| AT1G01670.1 | Thale cress | nucleus | 14.83 | 15.89 |
| AT1G01660.2 | Thale cress | nucleus | 21.74 | 14.94 |
| AT1G01680.1 | Thale cress | cytosol | 11.76 | 14.94 |
| AT5G65500.2 | Thale cress | cytosol | 21.74 | 10.64 |
| AT3G61410.3 | Thale cress | cytosol | 7.16 | 8.48 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:842054 | ProteinID:AAF02851.1 | ProteinID:AAF79327.1 | ProteinID:AEE33333.2 |
| ArrayExpress:AT1G56030 | EnsemblPlantsGene:AT1G56030 | RefSeq:AT1G56030 | TAIR:AT1G56030 | RefSeq:AT1G56030-TAIR-G | EnsemblPlants:AT1G56030.1 |
| TAIR:AT1G56030.1 | ncoils:Coil | EMBL:DQ446364 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR013083 |
| RefSeq:NP_001319249.1 | PFAM:PF04564 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009046 | PFscan:PS51698 |
| PANTHER:PTHR22849 | PANTHER:PTHR22849:SF59 | UniProt:Q9SGT1 | SMART:SM00504 | SUPFAM:SSF57850 | UniParc:UPI00016428F1 |
| InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
PUB57U-box domain-containing protein 57 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGT1]
Coordinates
chr1:-:20957098..20958550
Molecular Weight (calculated)
45585.8 Da
IEP (calculated)
6.299
GRAVY (calculated)
-0.552
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKNSYVLFA RLCVELPPLP SDESHGEITT VERQFLRNCQ MELENLSLKT ELPLVYVDES KYWRFIKTVR VLAEVFNNMK TTRTTRKSII QVLMNPILPS
101: ERSTDAMNLF LSTIEKLADL QFSDEDFNQL FVSSRLDLQL ENKYNDKVEV KLRKEAEDAL ARKIKEVVDL TERLLQVEAL EHKHKAKLQL RTETETAVAI
201: ERDYMRWKAE IFESEFNNQL VLRRESEIAL DKERKELEGI KNLLETCFTG QKNLKSQVIT WKDKYDQGSS IRKEKEVALS TKKLELEIFK QLAGSYKQDA
301: DAMRQERDNA LKTVQEIVDE QQPPPSFICP ITQDVMKNPH MAADGFTYEL EAIQKWINTG HRTSPMTNLK LSHFSFFPNR ALRSAIEELG R
101: ERSTDAMNLF LSTIEKLADL QFSDEDFNQL FVSSRLDLQL ENKYNDKVEV KLRKEAEDAL ARKIKEVVDL TERLLQVEAL EHKHKAKLQL RTETETAVAI
201: ERDYMRWKAE IFESEFNNQL VLRRESEIAL DKERKELEGI KNLLETCFTG QKNLKSQVIT WKDKYDQGSS IRKEKEVALS TKKLELEIFK QLAGSYKQDA
301: DAMRQERDNA LKTVQEIVDE QQPPPSFICP ITQDVMKNPH MAADGFTYEL EAIQKWINTG HRTSPMTNLK LSHFSFFPNR ALRSAIEELG R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.