Factsheet for AT1G01670.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G01680.1	Thale cress	cytosol	33.15	39.29
Bra033243.1-P	Field mustard	cytosol, plastid	55.34	39.15
AT2G45920.1	Thale cress	cytosol	28.49	26.0
AT3G61390.2	Thale cress	cytosol	27.95	23.45
TraesCS6D01G319000.1	Wheat	cytosol	19.18	22.65
AT1G01660.2	Thale cress	nucleus	32.05	20.56
Os10t0552400-01	Rice	cytosol	23.84	20.19
TraesCS1D01G211200.1	Wheat	cytosol	21.92	19.8
TraesCS1A01G207900.1	Wheat	cytosol	22.19	19.33
HORVU1Hr1G053260.5	Barley	cytosol	20.82	18.77
TraesCS1B01G221900.1	Wheat	cytosol	17.81	18.62
TraesCS1B01G221500.1	Wheat	cytosol	15.07	18.46
Os10t0548850-00	Rice	cytosol	20.27	18.27
TraesCS1A01G207800.1	Wheat	cytosol	13.97	17.71
Zm00001d029847_P001	Maize	cytosol	24.38	17.45
TraesCS1D01G211100.1	Wheat	cytosol	14.52	17.38
AT1G56040.1	Thale cress	cytosol	18.36	15.95
HORVU1Hr1G053230.7	Barley	cytosol	10.14	15.55
AT1G56030.1	Thale cress	cytosol	15.89	14.83
OQU92181	Sorghum	endoplasmic reticulum	22.19	14.04
AT3G61410.3	Thale cress	cytosol	12.6	13.94
AT5G65500.2	Thale cress	cytosol	24.11	11.01
HORVU5Hr1G077580.3	Barley	plastid	4.93	9.52

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:839365	ProteinID:AAF78397.1	ProteinID:AEE27320.1	EMBL:AK118101
ProteinID:ANM59608.1	ArrayExpress:AT1G01670	EnsemblPlantsGene:AT1G01670	RefSeq:AT1G01670	TAIR:AT1G01670	RefSeq:AT1G01670-TAIR-G
EnsemblPlants:AT1G01670.1	TAIR:AT1G01670.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	RefSeq:NP_001321953.1	RefSeq:NP_171673.2	PFAM:PF04564
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001078	PO:PO:0001185	PO:PO:0004507
PO:PO:0007103	PO:PO:0007115	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009009
PO:PO:0009025	PO:PO:0009031	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020038
PO:PO:0020100	PO:PO:0025022	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF59	UniProt:Q8GXQ7
SMART:SM00504	SUPFAM:SSF57850	UniParc:UPI00000ADE8A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

PUB56U-box domain-containing protein 56 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXQ7]

Coordinates

chr1:-:242713..246054

Molecular Weight (calculated)

41866.4 Da

IEP (calculated)

5.004

GRAVY (calculated)

-0.672

Length

365 amino acids

Sequence
(BLAST)

001: MTPSSSGLEQ SEIDAIQELE QTSRNDTLLK YHDICIDEGV IEQDVDMSCF SANSVGEWIV ELIYQNNIKK LIMGATADSH YSEGMVHITP TKADYVIQHA
101: PHCCNIWLVC NGNLIQTREG RFEHAGSAYS SSSSLHSIDS ALIPYGGAGR AERVTEPHAL SSSEEQSARG IEKMYYEEQR RRLEIEELKR EKEQRDKMRR
201: VREEALSSSS GVTKILYNEE VMRRREVEAE LNRAKAEIED MKRVQIELKE QHYADCRLLE KERDEAIKTT EELLRALEKG ESSIPLQWSV SIEPPQCFIC
301: PISKDIMQNP HVAADGYTYE ADEFRRWLNH GGEKSPMTNL RLENRNLIPN LVLRSAIKDW LQQHP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.