CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plastid
Any Predictor:	cytosol, extracellular, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83380	Canola	cytosol	78.29	35.69
CDX90051	Canola	cytosol	72.87	30.62
CDY15161	Canola	cytosol	68.22	28.76
AT1G01680.1	Thale cress	cytosol	61.24	25.65
HORVU5Hr1G077580.3	Barley	plastid	23.26	15.87
CDY18888	Canola	nucleus	29.46	13.33
CDX74775	Canola	cytosol	28.68	13.03
HORVU1Hr1G053230.7	Barley	cytosol	22.48	12.18
CDY27349	Canola	cytosol	24.81	12.03
CDY37075	Canola	cytosol	24.81	12.03
CDX89114	Canola	cytosol	24.81	11.23
CDY42502	Canola	cytosol	23.26	10.99
CDY48922	Canola	cytosol	24.03	10.65
TraesCS1B01G221500.1	Wheat	cytosol	24.03	10.4
TraesCS1A01G207800.1	Wheat	cytosol	21.71	9.72
CDX89113	Canola	cytosol	25.58	9.68
TraesCS6D01G319000.1	Wheat	cytosol	22.48	9.39
CDX71740	Canola	cytosol	19.38	9.23
CDY42501	Canola	cytosol	24.03	9.09
CDX71741	Canola	nucleus	27.91	8.91
TraesCS1D01G211100.1	Wheat	cytosol	20.93	8.85
CDX90050	Canola	nucleus	37.98	8.61
CDY15162	Canola	nucleus	36.43	8.27
CDY48923	Canola	cytosol	27.91	8.22
CDY51567	Canola	nucleus	25.58	8.09
TraesCS1B01G221900.1	Wheat	cytosol	20.93	7.74
TraesCS1D01G211200.1	Wheat	cytosol	20.93	6.68
TraesCS1A01G207900.1	Wheat	cytosol	20.93	6.44
Os10t0548850-00	Rice	cytosol	20.16	6.42
HORVU1Hr1G053260.5	Barley	cytosol	19.38	6.17
Zm00001d029847_P001	Maize	cytosol	21.71	5.49
Os10t0552400-01	Rice	cytosol	17.05	5.1
OQU92181	Sorghum	endoplasmic reticulum	17.05	3.81
CDY58794	Canola	nucleus	4.65	3.68
CDY14575	Canola	cytosol	20.93	3.38
CDY67215	Canola	cytosol	20.93	3.38
CDY54713	Canola	cytosol	20.16	3.26
CDX81289	Canola	cytosol	20.16	3.25
CDY08273	Canola	cytosol	7.75	2.02
CDY26075	Canola	cytosol	6.98	1.79

Protein Annotations

EnsemblPlants:CDX95679	EnsemblPlantsGene:GSBRNA2T00101565001	Gene3D:3.40.50.620	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	PANTHER:PTHR27003
PANTHER:PTHR27003:SF52	ProteinID:CDX95679	ProteinID:CDX95679.1	UniParc:UPI0004EE7A94	MapMan:35.1	:

Description

BnaC03g25600D

Coordinates

chrLK031890:-:604458..605733

Molecular Weight (calculated)

14432.4 Da

IEP (calculated)

5.893

GRAVY (calculated)

-0.140

Length

129 amino acids

Sequence
(BLAST)

001: MGETLYSDVI YVAVNQYVPE SELNLLWTLK TLRVKKLCLL QVLIPFSPNP SCGLSKSEIK AIQDSELKTS YDSLYKYRDI CSNEGVNEKD VGISLVSGYD
101: VGEEIVKLIN QNNIKKLVMG AAANPHYSR

Best Arabidopsis Sequence Match ( AT1G01680.1 )
(BLAST)

001: MEDAIYVAVN QDVRESKKTL LWALKNLQVK KIFLLHVHLP FSLTTSSSRL EQSEIDAIQD SELNTSVNSL YKYRDICINK GVNEKDVDTS MISGHDVGEG
101: IVELIYQNII TNLVMGAAAD PHYSRGMSIT SRKAEYVSQH APHSCKIWFI CKGKLIKQRE RSFYLGNPSD SFSEFSTSAE KPISKGRRRD EEEEPESPKE
201: HPGWILEPEE SPKKGRKETI EKSKSNESDE DPRLEDFKCP ISMEIMRDPH VAADGFTYEA EEFRKWLRSG GRTSPKTNKP LENHNLVPNH TLRIIIKDWL
301: EKNPNYKR

Arabidopsis Description

PUB54U-box domain-containing protein 54 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.