Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89113 | Canola | cytosol | 90.91 | 90.91 |
| AT3G61390.2 | Thale cress | cytosol | 66.57 | 52.18 |
| CDY48923 | Canola | cytosol | 66.28 | 51.6 |
| CDY51567 | Canola | nucleus | 59.24 | 49.51 |
| CDX71741 | Canola | nucleus | 50.73 | 42.82 |
| CDY58794 | Canola | nucleus | 19.94 | 41.72 |
| CDX83380 | Canola | cytosol | 26.39 | 31.8 |
| CDX90051 | Canola | cytosol | 27.86 | 30.94 |
| CDY15161 | Canola | cytosol | 27.57 | 30.72 |
| CDX89114 | Canola | cytosol | 25.51 | 30.53 |
| TraesCS6D01G319000.1 | Wheat | cytosol | 27.27 | 30.1 |
| CDY42502 | Canola | cytosol | 23.46 | 29.3 |
| CDX74775 | Canola | cytosol | 24.05 | 28.87 |
| CDY18888 | Canola | nucleus | 24.05 | 28.77 |
| CDY37075 | Canola | cytosol | 21.11 | 27.07 |
| CDY48922 | Canola | cytosol | 22.87 | 26.8 |
| CDY27349 | Canola | cytosol | 20.82 | 26.69 |
| CDX71740 | Canola | cytosol | 20.23 | 25.46 |
| CDX95679 | Canola | cytosol, extracellular, plastid | 9.09 | 24.03 |
| CDY15162 | Canola | nucleus | 38.71 | 23.24 |
| CDX90050 | Canola | nucleus | 38.12 | 22.85 |
| Os10t0552400-01 | Rice | cytosol | 28.15 | 22.27 |
| HORVU1Hr1G053230.7 | Barley | cytosol | 15.54 | 22.27 |
| Os10t0548850-00 | Rice | cytosol | 26.1 | 21.98 |
| TraesCS1A01G207800.1 | Wheat | cytosol | 17.6 | 20.83 |
| TraesCS1B01G221500.1 | Wheat | cytosol | 17.89 | 20.47 |
| TraesCS1D01G211100.1 | Wheat | cytosol | 17.6 | 19.67 |
| Zm00001d029847_P001 | Maize | cytosol | 29.33 | 19.61 |
| TraesCS1D01G211200.1 | Wheat | cytosol | 23.17 | 19.55 |
| TraesCS1B01G221900.1 | Wheat | cytosol | 19.35 | 18.91 |
| TraesCS1A01G207900.1 | Wheat | cytosol | 23.17 | 18.85 |
| HORVU1Hr1G053260.5 | Barley | cytosol | 21.41 | 18.02 |
| CDY08273 | Canola | cytosol | 24.63 | 16.94 |
| HORVU5Hr1G077580.3 | Barley | plastid | 9.38 | 16.93 |
| CDY26075 | Canola | cytosol | 24.34 | 16.53 |
| OQU92181 | Sorghum | endoplasmic reticulum | 26.69 | 15.77 |
| CDY54713 | Canola | cytosol | 27.27 | 11.65 |
| CDX81289 | Canola | cytosol | 26.39 | 11.26 |
| CDY67215 | Canola | cytosol | 26.1 | 11.15 |
| CDY14575 | Canola | cytosol | 26.1 | 11.15 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078HXQ2 | UniProt:A0A078HXQ2 | EnsemblPlants:CDY42501 | ProteinID:CDY42501 |
| ProteinID:CDY42501.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00074939001 | InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR27003 |
| PANTHER:PTHR27003:SF52 | SMART:SM00504 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EDC967 | InterPro:Ubox_domain |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaC04g21800DBnaC04g21800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXQ2]
Coordinates
chrLK032526:+:218378..219838
Molecular Weight (calculated)
39270.2 Da
IEP (calculated)
8.871
GRAVY (calculated)
-0.613
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMDDKIYVA VTGRDLENKS SLVWAIQNSG GRGFCIVYVQ KLRLCRKEKE RAHKIVDKYL NICRQMQVSA ETIYIEMDSV EEGILQLISN RGVKKLVMGA
101: AADRHYSMRM RDLQSKKAIY IRREAPATCH IWFTCKGYLI CSREGRRRDD LYLECASSNS LSQSKITKGT ESFPSSSMVK DDDRIQVSDA IKRAKQSENV
201: YISELKCKKE TENALRTTKE ELEKMIRKLQ YKYTLSMEAV RRLRQEQEEL KIELKEVSKL SSNRKNHGPP QYFICPITQD VMEDPHVAAD GFTYEGEAIS
301: SWFEREHETS PMTNKSLPHT SLVPNLAPRS AIQEWLQASS S
101: AADRHYSMRM RDLQSKKAIY IRREAPATCH IWFTCKGYLI CSREGRRRDD LYLECASSNS LSQSKITKGT ESFPSSSMVK DDDRIQVSDA IKRAKQSENV
201: YISELKCKKE TENALRTTKE ELEKMIRKLQ YKYTLSMEAV RRLRQEQEEL KIELKEVSKL SSNRKNHGPP QYFICPITQD VMEDPHVAAD GFTYEGEAIS
301: SWFEREHETS PMTNKSLPHT SLVPNLAPRS AIQEWLQASS S
001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHDIMEDPH VAADGFTYEG EAISRWFERG HETSPMINKR
401: LPHTSLVPNL ALRSAIQEWL QLRELLNRPS ACREI
Arabidopsis Description
PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.