Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48923 | Canola | cytosol | 85.64 | 79.0 |
| CDY51567 | Canola | nucleus | 56.44 | 55.88 |
| CDX89113 | Canola | cytosol | 43.81 | 51.91 |
| AT3G61390.2 | Thale cress | cytosol | 55.45 | 51.49 |
| CDY42501 | Canola | cytosol | 42.82 | 50.73 |
| CDX89114 | Canola | cytosol | 23.02 | 32.63 |
| CDY18888 | Canola | nucleus | 21.78 | 30.88 |
| CDY37075 | Canola | cytosol | 20.3 | 30.83 |
| CDY27349 | Canola | cytosol | 20.3 | 30.83 |
| CDX74775 | Canola | cytosol | 21.53 | 30.63 |
| CDY48922 | Canola | cytosol | 20.3 | 28.18 |
| CDX95679 | Canola | cytosol, extracellular, plastid | 8.91 | 27.91 |
| CDY42502 | Canola | cytosol | 18.81 | 27.84 |
| CDX71740 | Canola | cytosol | 18.32 | 27.31 |
| TraesCS1A01G207800.1 | Wheat | cytosol | 19.31 | 27.08 |
| HORVU1Hr1G053230.7 | Barley | cytosol | 15.35 | 26.05 |
| TraesCS1D01G211100.1 | Wheat | cytosol | 19.06 | 25.25 |
| TraesCS1B01G221500.1 | Wheat | cytosol | 18.56 | 25.17 |
| CDX83380 | Canola | cytosol | 17.08 | 24.38 |
| CDY15161 | Canola | cytosol | 18.32 | 24.18 |
| CDX90051 | Canola | cytosol | 17.57 | 23.13 |
| TraesCS1B01G221900.1 | Wheat | cytosol | 19.55 | 22.64 |
| TraesCS6D01G319000.1 | Wheat | cytosol | 17.08 | 22.33 |
| TraesCS1D01G211200.1 | Wheat | cytosol | 21.78 | 21.78 |
| Os10t0552400-01 | Rice | cytosol | 23.02 | 21.58 |
| HORVU1Hr1G053260.5 | Barley | cytosol | 21.53 | 21.48 |
| TraesCS1A01G207900.1 | Wheat | cytosol | 22.28 | 21.48 |
| CDY15162 | Canola | nucleus | 28.96 | 20.6 |
| CDX90050 | Canola | nucleus | 28.71 | 20.39 |
| HORVU5Hr1G077580.3 | Barley | plastid | 9.41 | 20.11 |
| Zm00001d029847_P001 | Maize | cytosol | 22.28 | 17.65 |
| Os10t0548850-00 | Rice | cytosol | 17.33 | 17.28 |
| CDY58794 | Canola | nucleus | 6.68 | 16.56 |
| OQU92181 | Sorghum | endoplasmic reticulum | 22.52 | 15.77 |
| CDY08273 | Canola | cytosol | 14.36 | 11.69 |
| CDY26075 | Canola | cytosol | 14.11 | 11.35 |
| CDY67215 | Canola | cytosol | 20.3 | 10.28 |
| CDY14575 | Canola | cytosol | 20.3 | 10.28 |
| CDX81289 | Canola | cytosol | 20.3 | 10.26 |
| CDY54713 | Canola | cytosol | 19.8 | 10.03 |
Protein Annotations
| EnsemblPlants:CDX71741 | EnsemblPlantsGene:GSBRNA2T00155439001 | Gene3D:3.40.50.620 | InterPro:IPR014729 | InterPro:Rossmann-like_a/b/a_fold | ncoils:Coil |
| PANTHER:PTHR27003 | PANTHER:PTHR27003:SF52 | ProteinID:CDX71741 | ProteinID:CDX71741.1 | SUPFAM:SSF52402 | UniParc:UPI0004EEF47F |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC08g31330D
Coordinates
chrLK031795:-:272633..274493
Molecular Weight (calculated)
46011.5 Da
IEP (calculated)
9.480
GRAVY (calculated)
-0.675
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLKVPIQET VKLVGSLRLC GSDRSEPVVI SKREMVMDEK VYVAVVARGL ESKSSLVWAI QNTVGREFCI VYVHQPMQIS APGEMFHEQK LRLYRKEKEK
101: AHNSLDKYLN ICRQMNVNAE KIYMEMDSVE EGILQLISQR GAKKLVMGAA ADRNYTMKMK DLHSKKAICI SREAPDTCHI WFTCKGYLIC TREATRRDNL
201: YNEGTSSSSL TQSEITKGTE SVASSSMAKD DVQIQVALIE AATSNREKRL EVSKRKEAEK AASDAIKRAK ESENLYLNEL KRRKETEKSL KEAKEEMEKM
301: RSEGEARIAE SNTVIRNLRG KYNLSMKVLR RLGDEHEELK RKLNEVSKHK SKCKEEEASP SKDREPPQYF ICPITQASSH ELGSKSCSSI CNPRMASSFK
401: LLKH
101: AHNSLDKYLN ICRQMNVNAE KIYMEMDSVE EGILQLISQR GAKKLVMGAA ADRNYTMKMK DLHSKKAICI SREAPDTCHI WFTCKGYLIC TREATRRDNL
201: YNEGTSSSSL TQSEITKGTE SVASSSMAKD DVQIQVALIE AATSNREKRL EVSKRKEAEK AASDAIKRAK ESENLYLNEL KRRKETEKSL KEAKEEMEKM
301: RSEGEARIAE SNTVIRNLRG KYNLSMKVLR RLGDEHEELK RKLNEVSKHK SKCKEEEASP SKDREPPQYF ICPITQASSH ELGSKSCSSI CNPRMASSFK
401: LLKH
001: MTLKIPIQEM VKMVGSLRSH GIDIPESMEI NKKEKIYVAV TEKDLESKSS LVWAIQNSGG KEFCIVHVHQ PIPGEMFHEQ KLRLYRKEKD KAHKNSEKYL
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHVRKRYKI NEN
101: QICRQMQVTA EIIYIETDSV EKGILQLISQ RGVTKLVMGA AADRHYSMRM RDLKSKKAIY IHREAPATCL IWFTCNGYLI CSREARRANN LYLECASSNS
201: LSQSDITRGT ESIVKDDDHL IKLAVTEAEA SKRKARFEAC KREEAEKTAV DALKKAKQWE NVYFEELKQR KETEKALRKR NDELEKMRSE SETQITESYT
301: VIRKLQEKNN LSMETFRGIR EEQEELKIKL REVSKLKGKR EEEEASTSNH REPPQYFICP ITHVRKRYKI NEN
Arabidopsis Description
PUB36U-box domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ84]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.