CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74775	Canola	cytosol	89.47	89.79
CDY37075	Canola	cytosol	70.53	75.56
CDY27349	Canola	cytosol	69.47	74.44
CDX89114	Canola	cytosol	45.26	45.26
CDY42502	Canola	cytosol	41.4	43.22
CDY48922	Canola	cytosol	43.51	42.61
CDX71740	Canola	cytosol	38.95	40.96
CDX95679	Canola	cytosol, extracellular, plastid	13.33	29.46
HORVU1Hr1G053230.7	Barley	cytosol	21.75	26.05
CDY15161	Canola	cytosol	26.32	24.51
CDX90051	Canola	cytosol	26.32	24.43
CDX83380	Canola	cytosol	24.21	24.38
CDY42501	Canola	cytosol	28.77	24.05
CDX89113	Canola	cytosol	28.42	23.75
TraesCS1B01G221500.1	Wheat	cytosol	24.56	23.49
TraesCS1A01G207800.1	Wheat	cytosol	23.16	22.92
HORVU5Hr1G077580.3	Barley	plastid	15.09	22.75
TraesCS1D01G211100.1	Wheat	cytosol	24.21	22.62
CDX71741	Canola	nucleus	30.88	21.78
TraesCS6D01G319000.1	Wheat	cytosol	23.16	21.36
CDY51567	Canola	nucleus	29.82	20.83
CDY48923	Canola	cytosol	31.23	20.32
TraesCS1B01G221900.1	Wheat	cytosol	23.86	19.48
TraesCS1A01G207900.1	Wheat	cytosol	26.32	17.9
TraesCS1D01G211200.1	Wheat	cytosol	24.21	17.08
Os10t0552400-01	Rice	cytosol	25.26	16.71
HORVU1Hr1G053260.5	Barley	cytosol	22.81	16.05
Os10t0548850-00	Rice	cytosol	21.05	14.81
Zm00001d029847_P001	Maize	cytosol	25.96	14.51
CDX90050	Canola	nucleus	26.67	13.36
CDY15162	Canola	nucleus	25.61	12.85
OQU92181	Sorghum	endoplasmic reticulum	24.91	12.3
CDY58794	Canola	nucleus	7.02	12.27
CDY14575	Canola	cytosol	24.91	8.9
CDY67215	Canola	cytosol	24.91	8.9
CDY54713	Canola	cytosol	24.56	8.77
CDX81289	Canola	cytosol	24.21	8.64
CDY08273	Canola	cytosol	9.12	5.24
CDY26075	Canola	cytosol	8.77	4.98

Protein Annotations

EnsemblPlants:CDY18888	EnsemblPlantsGene:GSBRNA2T00006077001	Gene3D:3.40.50.620	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	PANTHER:PTHR31964
PANTHER:PTHR31964:SF43	ProteinID:CDY18888	ProteinID:CDY18888.1	SEG:seg	SUPFAM:SSF52402	UniParc:UPI0004EC1F08
UniProt:A0A078G2J3	MapMan:35.1	:	:	:	:

Description

BnaC04g04620DBnaC04g04620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2J3]

Coordinates

chrLK032090:-:152528..153924

Molecular Weight (calculated)

32244.7 Da

IEP (calculated)

6.997

GRAVY (calculated)

-0.348

Length

285 amino acids

Sequence
(BLAST)

001: MEEEAASNNQ ILDEKIYVAV GINVWRNISN LLWALKNSQG NRICILHIHH PSPTIPLLGT RFEASTVDEE SLRAYREKEK TKIDKILQKY LSICLYKGVQ
101: AEKLCIEMDS IGKGIVETIY QHRIRKLVMG AAADKHYSMK MEDLKSKKAI FVNQQAPATC QIHFTCKGKL IHTREARVDE VRALSVLLSE FQRLVLPQIS
201: SGSLEEAVSL NGENNRSSMD IISSDTSSNA GRVEVTLSQD QEEPDDSSSS QVFPCRGMRL DVINFLIKST MLWQKLTIQN HEHSE

Best Arabidopsis Sequence Match ( AT2G45910.1 )
(BLAST)

001: MALVSPIPAM GERAGSMRFH GIGSPGSRSS RSGIMDEPVS RLIDEKIFVA VDKHVAKSKS TLIWALQNTG GKKICLIHVH QPSQMIPLMG AKFPVGAVKE
101: EEVRVFREKE REKVHMILDD YLRICQQRGV RAEKMFIEME SIENGIVQLI SELGIRKLVM GAAADRHYSR RMTDLKSRKA IFVRREAPTL CQIWFTCKGY
201: LIHTREATMD DTESEYASPR PSISASDLLQ TFSTPESEHQ HISRVQSTDS VQQLVSNGSS TEQSGRVSDG SLNTDEEERE SDGSEVTGSA TVMSSGHSSP
301: SSFPDGVDDS FNVKIRKATS EAHSSKQEAF AETLRRQKAE KNALDAIRRA KQSESAYSEE LKRRKDTEIA VAKEKERFIT IKNEQEVIME ELQSAMAQKA
401: MLESQIAKSD GTMEKLNQKL DIAVKLLQKL RDEREELQTE RDRALREAEE LRSHAETSTL QLPQYFTDFS FSEIEEATNH FDSTLKIGEG GYGSIYVGLL
501: RHTQVAIKML NPNSSQGPVE YQQEVDVLSK MRHPNIITLI GACPEGWSLV YEYLPGGSLE DRLTCKDNSP PLSWQNRVRI ATEICAALVF LHSNKAHSLV
601: HGDLKPANIL LDSNLVSKLS DFGTCSLLHP NGSKSVRTDV TGTVAYLDPE ASSSGELTPK SDVYSFGIIL LRLLTGRPAL RISNEVKYAL DNGTLNDLLD
701: PLAGDWPFVQ AEQLARLALR CCETVSENRP DLGTEVWRVL EPMRASSGGS SSFHLGRNEH RIAPPYFICP IFQEVMQDPH VAADGFTYEA EAIRAWLDSE
801: HDTSPMTNVK LSHTSLIANH ALRSAIQEWL QHHL

Arabidopsis Description

PUB33U-box domain-containing protein 33 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUH1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.