CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37075	Canola	cytosol	86.47	86.47
CDX74775	Canola	cytosol	77.44	72.54
CDY18888	Canola	nucleus	74.44	69.47
CDX89114	Canola	cytosol	53.38	49.82
CDY48922	Canola	cytosol	52.26	47.77
CDY42502	Canola	cytosol	48.5	47.25
CDX71740	Canola	cytosol	46.24	45.39
HORVU1Hr1G053230.7	Barley	cytosol	24.06	26.89
CDX95679	Canola	cytosol, extracellular, plastid	12.03	24.81
CDX83380	Canola	cytosol	24.81	23.32
TraesCS1B01G221500.1	Wheat	cytosol	25.56	22.82
TraesCS1D01G211100.1	Wheat	cytosol	25.56	22.3
HORVU5Hr1G077580.3	Barley	plastid	15.79	22.22
TraesCS1A01G207800.1	Wheat	cytosol	23.68	21.88
CDY15161	Canola	cytosol	24.81	21.57
TraesCS6D01G319000.1	Wheat	cytosol	24.81	21.36
CDX90051	Canola	cytosol	24.44	21.17
CDY42501	Canola	cytosol	26.69	20.82
CDX89113	Canola	cytosol	26.32	20.53
CDX71741	Canola	nucleus	30.83	20.3
CDY48923	Canola	cytosol	31.95	19.41
CDY51567	Canola	nucleus	28.95	18.87
TraesCS1B01G221900.1	Wheat	cytosol	23.68	18.05
TraesCS1A01G207900.1	Wheat	cytosol	25.94	16.47
TraesCS1D01G211200.1	Wheat	cytosol	24.81	16.34
HORVU1Hr1G053260.5	Barley	cytosol	24.44	16.05
Os10t0552400-01	Rice	cytosol	25.94	16.01
Os10t0548850-00	Rice	cytosol	22.56	14.81
Zm00001d029847_P001	Maize	cytosol	27.44	14.31
CDX90050	Canola	nucleus	28.2	13.18
CDY15162	Canola	nucleus	27.07	12.68
OQU92181	Sorghum	endoplasmic reticulum	25.56	11.79
CDY58794	Canola	nucleus	5.26	8.59
CDY67215	Canola	cytosol	25.19	8.4
CDY14575	Canola	cytosol	24.81	8.27
CDX81289	Canola	cytosol	24.81	8.26
CDY54713	Canola	cytosol	24.44	8.15
CDY08273	Canola	cytosol	9.77	5.24
CDY26075	Canola	cytosol	9.02	4.78

Protein Annotations

EnsemblPlants:CDY27349	EnsemblPlantsGene:GSBRNA2T00037286001	Gene3D:3.40.50.620	InterPro:IPR014729	InterPro:Rossmann-like_a/b/a_fold	PANTHER:PTHR31964
PANTHER:PTHR31964:SF43	ProteinID:CDY27349	ProteinID:CDY27349.1	UniParc:UPI0004EDB976	UniProt:A0A078GQ66	MapMan:35.1

Description

BnaC04g50560DBnaC04g50560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GQ66]

Coordinates

chrLK032203:-:203970..205248

Molecular Weight (calculated)

30193.4 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.320

Length

266 amino acids

Sequence
(BLAST)

001: MEEEEAATCQ VLEEKLYVAV GREVWKNISN LMWALENSQG KRICILHIHQ PSPTIPVLGT RFEASTVDEE SVRAYRGKET AKTDKILQEY LSICLKKGVQ
101: AEKLCVEMDS IEKGIVETIY QHRIRKFVMG AAADKHYSMK MEDLKSKKAN FVCQQAPATC QIHFTCKGNL IHTREARVDE VRALSVLLSD FQRLVLPQIR
201: SDVQNSRSSI DTISSEVLLS DIQEEPNDSS SLAFPCSGMG LNMMNFLINS TKLWQKLTIQ NHEHCE

Best Arabidopsis Sequence Match ( AT3G61410.1 )
(BLAST)

001: MEEKEEAGVM DERIYVALGR EIANNKSNLA WVLDNCQGNK ICIVLVHRPP QMIPVLGTKF DAATVDEELV RAYREKQKAK TDKILDEYLR ICLRKGVQAE
101: KLCVEMNSIE KGIVQMISEN KVRKFIMGAA SDKHFSTKME DLRSKKAIFV CQQASATCHI RFTCKGYLIH TREARMDEVR ALSALLSDFQ RLVTSQSSAN
201: LDQDSGGSKR KSEHEEGEEE ERTSRTSSSR SASTLSYFGG SEASSSVSVM EEISNRSSPP SLPCSGMGLG MITFLINSTK LWQRLAIQNH KHCE

Arabidopsis Description

U-box kinase family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.