Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G252200.1 | Wheat | nucleus | 96.68 | 97.33 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 96.68 | 95.41 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 94.25 | 93.83 |
| Zm00001d020667_P001 | Maize | nucleus | 23.23 | 78.95 |
| Os02t0704600-01 | Rice | nucleus | 73.67 | 73.03 |
| OQU85551 | Sorghum | cytosol, plastid | 68.36 | 68.21 |
| OQU78405 | Sorghum | nucleus | 62.61 | 66.43 |
| Zm00001d038964_P001 | Maize | nucleus | 60.84 | 64.71 |
| Zm00001d051562_P001 | Maize | plastid | 62.17 | 63.72 |
| Zm00001d017768_P006 | Maize | cytosol | 65.93 | 62.74 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 42.7 | 47.07 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 43.14 | 46.88 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 40.27 | 46.19 |
| CDX73773 | Canola | cytosol | 37.61 | 41.26 |
| Bra037167.1-P | Field mustard | mitochondrion | 19.03 | 40.76 |
| Bra036850.1-P | Field mustard | plastid | 36.73 | 40.0 |
| CDX77962 | Canola | nucleus, plastid | 36.5 | 39.76 |
| CDX90677 | Canola | nucleus | 35.84 | 39.71 |
| CDY28989 | Canola | nucleus | 36.5 | 39.38 |
| Bra012880.1-P | Field mustard | nucleus | 35.4 | 39.22 |
| KRH08190 | Soybean | nucleus | 37.61 | 38.99 |
| AT3G50910.1 | Thale cress | cytosol | 37.17 | 37.58 |
| KRH76747 | Soybean | plastid | 34.96 | 36.24 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 39.82 | 36.14 |
| CDY18608 | Canola | nucleus | 28.76 | 35.81 |
| KRH28715 | Soybean | cytosol | 30.97 | 34.15 |
| Solyc02g085000.2.1 | Tomato | nucleus | 34.73 | 33.98 |
| AT5G66480.1 | Thale cress | plastid | 32.52 | 33.11 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 34.51 | 32.43 |
| CDY67893 | Canola | nucleus | 23.01 | 30.14 |
| KRH69884 | Soybean | nucleus | 35.62 | 22.24 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G272000.1 | EnsemblPlantsGene:TraesCS6A01G272000 | ncoils:Coil | PANTHER:PTHR35490 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:498950820..498955005
Molecular Weight (calculated)
49571.4 Da
IEP (calculated)
4.597
GRAVY (calculated)
-0.706
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTITHYVLD PFLETGSLPN LQKLVPKPPP AAPLPPEKSS EKPIPVPVAP ARTSTLPALY STPESTPLPD SPSSFPGTWS PYLINHKRRG PGLIKTSSQG
101: DVGSEGSLPK FPEGLPALPK KSEAFRVQES EFRFSQESDG VVNNGVKETL DGQNEGVQKG KATHFGQDEQ DQPEFEFRHE SPDALVRPVN VGRLVNNGMP
201: RDGENDAFLE PQDSQSVTSN SEAEDAGGQG WWKPSSPYGT SVGTPGAEFY DAFEEISSDG ATRSSRCIDD EYREMRLSML TEIEGRKQAE EVAETWQKEW
301: KKLSHHLSLI ALSLPSPTVA ENDDDTSADP GAELCQQITV SQLVSAAIAR GIARVEVESE MESVISAKNF EIARLSDRVQ YYEAANREMS QRNQEAIEMS
401: RQQRNKRKMR QKWFWGSVGI AVTLGTAAIA WSYMPASQSQ AGDSNSTNTN SD
101: DVGSEGSLPK FPEGLPALPK KSEAFRVQES EFRFSQESDG VVNNGVKETL DGQNEGVQKG KATHFGQDEQ DQPEFEFRHE SPDALVRPVN VGRLVNNGMP
201: RDGENDAFLE PQDSQSVTSN SEAEDAGGQG WWKPSSPYGT SVGTPGAEFY DAFEEISSDG ATRSSRCIDD EYREMRLSML TEIEGRKQAE EVAETWQKEW
301: KKLSHHLSLI ALSLPSPTVA ENDDDTSADP GAELCQQITV SQLVSAAIAR GIARVEVESE MESVISAKNF EIARLSDRVQ YYEAANREMS QRNQEAIEMS
401: RQQRNKRKMR QKWFWGSVGI AVTLGTAAIA WSYMPASQSQ AGDSNSTNTN SD
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.