Factsheet for TraesCS2B01G473100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G125000.1
TraesCS1A01G177600.1
TraesCS1A01G189000.1
TraesCS1B01G142300.1
TraesCS1B01G196700.3
TraesCS1B01G202600.1
TraesCS1B01G361800.1
TraesCS1D01G129000.2
TraesCS1D01G176100.1
TraesCS1D01G187400.1
TraesCS3A01G136500.1
TraesCS3D01G137200.1
TraesCS4A01G361100.1
TraesCS4A01G365100.1
TraesCS5A01G259000.1
TraesCS5B01G230700.1
TraesCS5B01G511800.1
TraesCS5D01G512300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	TraesCS1A01G125000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G142300.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G361800.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1D01G129000.2	AT1G06390.1	21798944
AT3G60200.1	TraesCS3A01G136500.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS3D01G137200.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS4A01G365100.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5A01G259000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5B01G230700.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1A01G189000.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1B01G196700.3	AT4G00720.1	21798944
AT3G60200.1	TraesCS1D01G187400.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1D01G176100.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS4A01G361100.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5B01G511800.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5D01G512300.2	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G451800.1	Wheat	nucleus	89.96	88.69
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	83.87	82.11
EES12746	Sorghum	nucleus	60.93	57.43
Zm00001d002512_P001	Maize	cytosol	56.99	55.4
Os04t0588000-00	Rice	nucleus	27.96	51.32
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	52.69	51.04
KRH66386	Soybean	mitochondrion	8.96	35.71
TraesCS1B01G227800.1	Wheat	nucleus	35.48	35.23
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	33.69	34.56
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	32.62	33.33
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	32.26	33.21
VIT_15s0021g00520.t01	Wine grape	nucleus	34.41	31.68
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	23.66	31.28
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	34.05	30.84
KRH48907	Soybean	nucleus	30.47	30.8
CDY48240	Canola	plastid	30.47	30.8
CDX89054	Canola	cytosol	31.9	30.58
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	32.97	30.16
PGSC0003DMT400004234	Potato	nucleus	33.33	29.81
CDX74671	Canola	plastid	29.75	29.54
Bra004849.1-P	Field mustard	plastid	29.75	29.54
CDY42673	Canola	nucleus	30.47	29.41
Bra014506.1-P	Field mustard	cytosol	30.47	29.21
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	32.62	29.07
CDY30478	Canola	nucleus	25.45	28.74
KRH00975	Soybean	nucleus	30.82	28.57
CDY23445	Canola	nucleus	25.09	28.57
Bra037642.1-P	Field mustard	nucleus	25.09	28.46
CDY64077	Canola	cytosol	24.01	27.35
KRH40251	Soybean	cytosol	30.47	27.33
Bra003403.1-P	Field mustard	cytosol	23.66	26.83
CDX98409	Canola	nucleus	22.94	26.56

Protein Annotations

EnsemblPlants:TraesCS2B01G473100.1	EnsemblPlantsGene:TraesCS2B01G473100	InterPro:UPF0503	PANTHER:PTHR31659	PANTHER:PTHR31659:SF7	PFAM:PF05340
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:669936063..669937193

Molecular Weight (calculated)

30085.8 Da

IEP (calculated)

11.840

GRAVY (calculated)

-0.694

Length

279 amino acids

Sequence
(BLAST)

001: MRCRTHPYES AVGVCAACLR GRLLALAAKQ NQAPSLPPTP LPEPVPLFPR SVSPYVCPRK SDAASGPGPW RHPSSRLFFR TPQVGPGTGF EEGDTGFQIR
101: RRRSSKLSAL AALFGGHRQH RHDASEEKGG GRRHGSWLAG IMPRARGRRK EGPATESPLS PRRSSRVISN RGLSPVRCSY EESEEGGSVA DSPWRPSPMR
201: KTPCRRLLGG AGAGVSGFAV CISPLVRPSP ARNHHRGGHP PDAPALSGEL RPSPLHQPSS GSSLHHCRSW KLADGGRFR

Best Arabidopsis Sequence Match ( AT3G60200.1 )
(BLAST)

001: MRCKRHTVDL SSSNGVCASC LRERLLSLAA SAAVSAAVED NQSKKSNNNN HPPLLIFPRS VSPYVTRRKS DAGAGGGDPL VSSNRRFITT PQIDLVGYSC
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR

Arabidopsis Description

Uncharacterized protein At3g60200 [Source:UniProtKB/TrEMBL;Acc:Q9M1C3]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.