Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30478 | Canola | nucleus | 85.71 | 85.02 |
| CDY48240 | Canola | plastid | 59.59 | 52.9 |
| CDX74671 | Canola | plastid | 60.41 | 52.67 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 58.37 | 45.69 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 47.76 | 43.01 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 46.94 | 42.44 |
| CDX98409 | Canola | nucleus | 41.22 | 41.91 |
| CDY42673 | Canola | nucleus | 47.76 | 40.48 |
| KRH66386 | Soybean | mitochondrion | 11.43 | 40.0 |
| CDY64077 | Canola | cytosol | 39.59 | 39.59 |
| CDX89054 | Canola | cytosol | 46.12 | 38.83 |
| KRH40251 | Soybean | cytosol | 38.78 | 30.55 |
| KRH00975 | Soybean | nucleus | 36.73 | 29.9 |
| KRH48907 | Soybean | nucleus | 33.47 | 29.71 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 36.33 | 28.9 |
| PGSC0003DMT400004234 | Potato | nucleus | 36.33 | 28.53 |
| Os04t0588000-00 | Rice | nucleus | 17.55 | 28.29 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 34.69 | 28.05 |
| GSMUA_Achr2P04810_001 | Banana | nucleus | 33.06 | 27.46 |
| GSMUA_Achr10P... | Banana | nucleus | 31.84 | 26.71 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 22.86 | 26.54 |
| TraesCS2D01G451800.1 | Wheat | nucleus | 29.8 | 25.8 |
| TraesCS2A01G452000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.8 | 25.61 |
| Zm00001d051505_P001 | Maize | nucleus | 30.2 | 25.43 |
| Zm00001d017657_P001 | Maize | nucleus | 29.39 | 25.35 |
| TraesCS2B01G473100.1 | Wheat | cytosol | 28.57 | 25.09 |
| GSMUA_Achr3P27500_001 | Banana | cytosol | 30.2 | 24.58 |
| TraesCS6D01G243600.1 | Wheat | mitochondrion, nucleus | 28.57 | 24.56 |
| Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 28.98 | 24.48 |
| Zm00001d002512_P001 | Maize | cytosol | 27.76 | 23.69 |
| TraesCS6A01G263100.1 | Wheat | mitochondrion, nucleus | 27.76 | 23.53 |
| TraesCS6B01G290200.1 | Wheat | mitochondrion, nucleus | 27.35 | 23.26 |
| EES12746 | Sorghum | nucleus | 27.76 | 22.97 |
| EES05698 | Sorghum | nucleus | 28.16 | 22.48 |
| Zm00001d047060_P001 | Maize | nucleus | 21.22 | 22.41 |
| HORVU1Hr1G054570.1 | Barley | nucleus | 22.45 | 20.3 |
| Os10t0567600-01 | Rice | plasma membrane | 24.08 | 20.21 |
| EER91903 | Sorghum | nucleus | 25.71 | 19.44 |
| TraesCS1A01G214000.1 | Wheat | mitochondrion, nucleus | 22.04 | 19.22 |
| TraesCS1B01G227800.1 | Wheat | nucleus | 22.04 | 19.22 |
| Zm00001d030004_P001 | Maize | mitochondrion, nucleus | 23.27 | 19.13 |
| TraesCS1D01G216900.1 | Wheat | mitochondrion, nucleus | 21.63 | 18.47 |
| HORVU7Hr1G082390.1 | Barley | nucleus | 21.22 | 15.29 |
Protein Annotations
| EnsemblPlants:CDY23445 | EnsemblPlantsGene:GSBRNA2T00022059001 | PANTHER:PTHR35486 | ProteinID:CDY23445 | ProteinID:CDY23445.1 | SEG:seg |
| UniParc:UPI0004EDEEFF | UniProt:A0A078GAI0 | MapMan:35.2 | : | : | : |
Description
BnaC04g49730DBnaC04g49730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAI0]
Coordinates
chrLK032143:+:493920..494657
Molecular Weight (calculated)
26592.1 Da
IEP (calculated)
10.636
GRAVY (calculated)
-0.745
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCKRHTVDS SSTIGVCASC LRERLFSLAA SEDNDHHHHV HSRTSPPPPP LVFPRSVSPY AAARNSDAGG GGDSLASYGG EGSKSSAKVF ETNRSVKKKQ
101: TGLSRFSTLF GTDRSWFSKV LSPRSKTTTC YIEDLIAAES NHHQQRPRHS YCKGMSPANE LESFDDSPGR ARRTPATGTP GRRKTAAATM GLCLSPLVRA
201: KPNCSFGYTG YHPKSPVKPH ISTATSFSAN RSKKLADLGR ADNRR
101: TGLSRFSTLF GTDRSWFSKV LSPRSKTTTC YIEDLIAAES NHHQQRPRHS YCKGMSPANE LESFDDSPGR ARRTPATGTP GRRKTAAATM GLCLSPLVRA
201: KPNCSFGYTG YHPKSPVKPH ISTATSFSAN RSKKLADLGR ADNRR
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.