Factsheet for Zm00001d030004_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008893_P001
Zm00001d013859_P002
Zm00001d029664_P001
Zm00001d032464_P008
Zm00001d039407_P001
Zm00001d048564_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	Zm00001d008893_P001	AT1G06390.1	21798944
AT3G60200.1	Zm00001d039407_P001	AT1G06390.1	21798944
AT3G60200.1	Zm00001d029664_P001	AT4G00720.1	21798944
AT3G60200.1	Zm00001d048564_P003	AT4G00720.1	21798944
AT3G60200.1	Zm00001d013859_P002	AT4G39050.1	21798944
AT3G60200.1	Zm00001d032464_P008	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047060_P001	Maize	nucleus	47.99	61.64
Zm00001d002512_P001	Maize	cytosol	40.27	41.81
Zm00001d017657_P001	Maize	nucleus	38.93	40.85
Zm00001d051505_P001	Maize	nucleus	37.25	38.14
KRH66386	Soybean	mitochondrion	8.05	34.29
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	22.82	32.23
KRH00975	Soybean	nucleus	30.87	30.56
KRH40251	Soybean	cytosol	30.87	29.58
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	26.51	29.04
VIT_15s0021g00520.t01	Wine grape	nucleus	29.53	29.04
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	26.17	28.57
KRH48907	Soybean	nucleus	26.17	28.26
PGSC0003DMT400004234	Potato	nucleus	29.53	28.21
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	25.5	28.04
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	28.86	27.92
CDY64077	Canola	cytosol	22.48	27.35
Bra014506.1-P	Field mustard	cytosol	26.51	27.15
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	27.52	26.89
Bra003403.1-P	Field mustard	cytosol	22.15	26.83
CDX74671	Canola	plastid	25.17	26.69
Bra004849.1-P	Field mustard	plastid	25.17	26.69
CDY48240	Canola	plastid	24.5	26.45
CDY42673	Canola	nucleus	25.5	26.3
CDX98409	Canola	nucleus	21.14	26.14
CDX89054	Canola	cytosol	25.5	26.12
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	24.83	23.64
Bra037642.1-P	Field mustard	nucleus	19.46	23.58
CDY30478	Canola	nucleus	19.46	23.48
CDY23445	Canola	nucleus	19.13	23.27

Protein Annotations

EMBL:BT062155	EnsemblPlants:Zm00001d030004_P001	EnsemblPlants:Zm00001d030004_T001	EnsemblPlantsGene:Zm00001d030004	EntrezGene:100381745	InterPro:UPF0503
PANTHER:PTHR35486	PFAM:PF05340	ProteinID:ONL99958.1	SEG:seg	UniParc:UPI000194856C	UniProt:C0HIJ9
MapMan:35.2	:	:	:	:	:

Description

OSJNBb0016D16.16 protein; protein

Coordinates

chr1:-:98579791..98580687

Molecular Weight (calculated)

32351.6 Da

IEP (calculated)

11.729

GRAVY (calculated)

-0.963

Length

298 amino acids

Sequence
(BLAST)

001: MRCKLHPYAN AVGVCAACLR DRLLALAAER AQAAAEASSD GGYGSSSSSP PPLHLPARRH RQHGHDEART GTFPRSVSPY VQRRRSDACA YYATSSSSSS
101: SSAYQHQPSL LFFRTPQVGP AFRGDEPGDG EDTGGGSRRK QAAPRRSFLS AIFGGRLRRR HGREREEAGR NRKEPPRRST SWLSAITRRK RRPGEEPESF
201: PAPQDEEPES PGGGSWWFPS PSPARQQHRR RHGAGSGASG DGVSGLAVCL SPLVRPSSAG GRRRCQPPDP SALGDSHRRL ASFGRNASRK LADMGRLR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.