Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007514.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 63.28 | 70.7 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 62.62 | 70.48 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 62.3 | 69.85 |
| Bra014506.1-P | Field mustard | cytosol | 59.34 | 62.2 |
| CDY42673 | Canola | nucleus | 58.69 | 61.94 |
| CDX89054 | Canola | cytosol | 57.38 | 60.14 |
| CDX98409 | Canola | nucleus | 45.9 | 58.09 |
| CDY64077 | Canola | cytosol | 46.23 | 57.55 |
| Bra003403.1-P | Field mustard | cytosol | 45.9 | 56.91 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 51.8 | 50.48 |
| KRH66386 | Soybean | mitochondrion | 10.82 | 47.14 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 40.33 | 40.59 |
| KRH40251 | Soybean | cytosol | 40.0 | 39.23 |
| KRH00975 | Soybean | nucleus | 38.03 | 38.54 |
| PGSC0003DMT400004234 | Potato | nucleus | 39.02 | 38.14 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 38.36 | 37.99 |
| KRH48907 | Soybean | nucleus | 33.77 | 37.32 |
| TraesCS2D01G451800.1 | Wheat | nucleus | 31.15 | 33.57 |
| TraesCS6D01G243600.1 | Wheat | mitochondrion, nucleus | 31.15 | 33.33 |
| TraesCS2A01G452000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 30.82 | 32.98 |
| TraesCS2B01G473100.1 | Wheat | cytosol | 30.16 | 32.97 |
| TraesCS6B01G290200.1 | Wheat | mitochondrion, nucleus | 30.49 | 32.29 |
| Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 30.49 | 32.07 |
| TraesCS6A01G263100.1 | Wheat | mitochondrion, nucleus | 30.16 | 31.83 |
| Zm00001d002512_P001 | Maize | cytosol | 29.84 | 31.71 |
| Os04t0588000-00 | Rice | nucleus | 15.41 | 30.92 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 21.31 | 30.81 |
| Zm00001d017657_P001 | Maize | nucleus | 28.52 | 30.63 |
| Zm00001d047060_P001 | Maize | nucleus | 22.95 | 30.17 |
| GSMUA_Achr2P04810_001 | Banana | nucleus | 29.18 | 30.17 |
| EES12746 | Sorghum | nucleus | 29.18 | 30.07 |
| Zm00001d051505_P001 | Maize | nucleus | 28.52 | 29.9 |
| EES05698 | Sorghum | nucleus | 29.18 | 28.99 |
| HORVU1Hr1G054570.1 | Barley | nucleus | 24.92 | 28.04 |
| Zm00001d030004_P001 | Maize | mitochondrion, nucleus | 26.89 | 27.52 |
| TraesCS1A01G214000.1 | Wheat | mitochondrion, nucleus | 25.25 | 27.4 |
| GSMUA_Achr3P27500_001 | Banana | cytosol | 26.89 | 27.24 |
| GSMUA_Achr10P... | Banana | nucleus | 25.57 | 26.71 |
| TraesCS1D01G216900.1 | Wheat | mitochondrion, nucleus | 24.92 | 26.48 |
| Os10t0567600-01 | Rice | plasma membrane | 24.59 | 25.68 |
| TraesCS1B01G227800.1 | Wheat | nucleus | 23.61 | 25.62 |
| EER91903 | Sorghum | nucleus | 26.89 | 25.31 |
| HORVU7Hr1G082390.1 | Barley | nucleus | 24.59 | 22.06 |
Protein Annotations
| MapMan:35.2 | EntrezGene:825190 | UniProt:A0A178VF06 | ProteinID:AEE80023.1 | ArrayExpress:AT3G60200 | EnsemblPlantsGene:AT3G60200 |
| RefSeq:AT3G60200 | TAIR:AT3G60200 | RefSeq:AT3G60200-TAIR-G | EnsemblPlants:AT3G60200.1 | TAIR:AT3G60200.1 | EMBL:AY070055 |
| EMBL:AY117309 | ProteinID:CAB75935.1 | GO:GO:0008150 | RefSeq:NP_191579.1 | ProteinID:OAP04829.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR35486 |
| UniProt:Q9M1C3 | UniParc:UPI00000A559F | SEG:seg | : | : | : |
Description
Uncharacterized protein At3g60200 [Source:UniProtKB/TrEMBL;Acc:Q9M1C3]
Coordinates
chr3:+:22248892..22250568
Molecular Weight (calculated)
33563.8 Da
IEP (calculated)
10.943
GRAVY (calculated)
-0.670
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCKRHTVDL SSSNGVCASC LRERLLSLAA SAAVSAAVED NQSKKSNNNN HPPLLIFPRS VSPYVTRRKS DAGAGGGDPL VSSNRRFITT PQIDLVGYSC
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.