Factsheet for Bra003403.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000961.1-P
Bra009783.1-P
Bra009916.1-P
Bra010714.1-P
Bra020466.1-P
Bra033597.1-P
Bra036593.1-P
Bra037354.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	Bra000961.1-P	AT4G00720.1	21798944
AT3G60200.1	Bra037354.1-P	AT4G00720.1	21798944
AT3G60200.1	Bra010714.1-P	AT4G39050.1	21798944
AT3G60200.1	Bra033597.1-P	AT4G39050.1	21798944
AT3G60200.1	Bra009783.1-P	AT5G24660.1	21798944
AT3G60200.1	Bra020466.1-P	AT5G24660.1	21798944
AT3G60200.1	Bra009916.1-P	AT5G26751.1	21798944
AT3G60200.1	Bra036593.1-P	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64077	Canola	cytosol	96.75	97.14
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	59.35	53.48
Bra014506.1-P	Field mustard	cytosol	60.57	51.2
KRH66386	Soybean	mitochondrion	14.23	50.0
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	56.91	45.9
Bra037642.1-P	Field mustard	nucleus	41.06	41.06
Bra004849.1-P	Field mustard	plastid	45.94	40.21
KRH48907	Soybean	nucleus	35.77	31.88
KRH00975	Soybean	nucleus	36.99	30.23
KRH40251	Soybean	cytosol	38.21	30.23
VIT_15s0021g00520.t01	Wine grape	nucleus	36.59	29.7
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	36.59	29.22
PGSC0003DMT400004234	Potato	nucleus	36.59	28.85
Zm00001d047060_P001	Maize	nucleus	26.83	28.45
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	31.3	26.55
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	30.08	25.96
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	29.67	25.35
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	29.27	24.91
EES05698	Sorghum	nucleus	30.89	24.76
TraesCS2D01G451800.1	Wheat	nucleus	28.05	24.38
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	20.73	24.17
Zm00001d051505_P001	Maize	nucleus	28.46	24.05
Zm00001d002512_P001	Maize	cytosol	28.05	24.04
Zm00001d017657_P001	Maize	nucleus	27.64	23.94
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	27.64	23.86
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	27.24	23.84
TraesCS2B01G473100.1	Wheat	cytosol	26.83	23.66
Os10t0567600-01	Rice	plasma membrane	27.64	23.29
HORVU1Hr1G054570.1	Barley	nucleus	25.61	23.25
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	26.83	23.0
TraesCS1B01G227800.1	Wheat	nucleus	26.02	22.78
GSMUA_Achr2P04810_001	Banana	nucleus	27.24	22.71
EES12746	Sorghum	nucleus	27.24	22.64
GSMUA_Achr10P...	Banana	nucleus	26.83	22.6
Os04t0588000-00	Rice	nucleus	13.82	22.37
Zm00001d030004_P001	Maize	mitochondrion, nucleus	26.83	22.15
GSMUA_Achr3P27500_001	Banana	cytosol	25.2	20.6
EER91903	Sorghum	nucleus	26.42	20.06
HORVU7Hr1G082390.1	Barley	nucleus	24.39	17.65

Protein Annotations

EnsemblPlants:Bra003403.1	EnsemblPlants:Bra003403.1-P	EnsemblPlantsGene:Bra003403	PANTHER:PTHR35486	SEG:seg	UniParc:UPI000254178C
UniProt:M4CGS0	MapMan:35.2	:	:	:	:

Description

AT3G60200 (E=3e-038) | unknown protein

Coordinates

chrA07:+:13047998..13048738

Molecular Weight (calculated)

26177.9 Da

IEP (calculated)

10.945

GRAVY (calculated)

-0.707

Length

246 amino acids

Sequence
(BLAST)

001: MRCKRHAVDL TSTVGVCASC LHERLLSLAA SIAVEENNNN RLSRKSSNPS PPPLPHRSDA GGGGGLGVSG KDFESREKSK GGSVSRISNP FRARSDSNPK
101: SESSSSSSRS WISSFLSTGR SKKQPAIEDV ISGCRGMSPA RDTGAEDGSE VPCGSIEETP GRPRRTPAVK TPGRRKIMTG MGFCLSPLVR ARPNCPFKRK
201: SRFPSEFVGN AGEVAAAEKP HISEAASFCA NRSKKLADLG KGNHRR

Best Arabidopsis Sequence Match ( AT3G60200.1 )
(BLAST)

001: MRCKRHTVDL SSSNGVCASC LRERLLSLAA SAAVSAAVED NQSKKSNNNN HPPLLIFPRS VSPYVTRRKS DAGAGGGDPL VSSNRRFITT PQIDLVGYSC
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR

Arabidopsis Description

Uncharacterized protein At3g60200 [Source:UniProtKB/TrEMBL;Acc:Q9M1C3]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.