Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017657_P001 | Maize | nucleus | 65.64 | 67.25 |
| Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 65.64 | 65.86 |
| TraesCS6A01G263100.1 | Wheat | mitochondrion, nucleus | 63.57 | 64.01 |
| TraesCS6B01G290200.1 | Wheat | mitochondrion, nucleus | 63.23 | 63.89 |
| TraesCS6D01G243600.1 | Wheat | mitochondrion, nucleus | 62.54 | 63.86 |
| EES05698 | Sorghum | nucleus | 65.98 | 62.54 |
| Zm00001d002512_P001 | Maize | cytosol | 50.17 | 50.87 |
| Zm00001d030004_P001 | Maize | mitochondrion, nucleus | 38.14 | 37.25 |
| Zm00001d047060_P001 | Maize | nucleus | 27.84 | 34.91 |
| PGSC0003DMT400004234 | Potato | nucleus | 35.4 | 33.01 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 34.71 | 32.79 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 30.24 | 32.35 |
| Bra007514.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 30.24 | 32.23 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 23.37 | 32.23 |
| KRH00975 | Soybean | nucleus | 32.65 | 31.56 |
| KRH66386 | Soybean | mitochondrion | 7.56 | 31.43 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 29.21 | 31.37 |
| Bra004849.1-P | Field mustard | plastid | 30.24 | 31.32 |
| CDX74671 | Canola | plastid | 30.24 | 31.32 |
| KRH40251 | Soybean | cytosol | 33.33 | 31.19 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 32.3 | 31.02 |
| CDY23445 | Canola | nucleus | 25.43 | 30.2 |
| CDY48240 | Canola | plastid | 28.52 | 30.07 |
| KRH48907 | Soybean | nucleus | 28.52 | 30.07 |
| CDX89054 | Canola | cytosol | 28.87 | 28.87 |
| CDY30478 | Canola | nucleus | 24.4 | 28.74 |
| CDY64077 | Canola | cytosol | 24.05 | 28.57 |
| AT3G60200.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 29.9 | 28.52 |
| Bra014506.1-P | Field mustard | cytosol | 28.52 | 28.52 |
| Bra037642.1-P | Field mustard | nucleus | 24.05 | 28.46 |
| Bra003403.1-P | Field mustard | cytosol | 24.05 | 28.46 |
| CDY42673 | Canola | nucleus | 28.18 | 28.37 |
| CDX98409 | Canola | nucleus | 23.37 | 28.22 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 28.87 | 26.84 |
Protein Annotations
| EnsemblPlants:Zm00001d051505_P001 | EnsemblPlants:Zm00001d051505_T001 | EnsemblPlantsGene:Zm00001d051505 | EntrezGene:100284963 | InterPro:UPF0503 | PANTHER:PTHR31659 |
| PANTHER:PTHR31659:SF2 | PFAM:PF05340 | ProteinID:AQK54348.1 | SEG:seg | UniParc:UPI000221B679 | UniProt:K7U370 |
| MapMan:35.2 | : | : | : | : | : |
Description
Transposon protein
Coordinates
chr4:-:160597955..160598830
Molecular Weight (calculated)
31372.1 Da
IEP (calculated)
11.877
GRAVY (calculated)
-0.874
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCKRHPNQA GGGVCATCLR DRLLALEAAQ SGDASPPGPA QAQAPEPPPA FPRSVSPYVS RRKSDTSGGA LRHHPSLLFF RTPQVGPAYG GGGGGGALEE
101: PHIGYGYGYG HEKRRAGKFS VLATLFGRHH HHRRPEARHQ ERKKHSWLAG IMPRRRRSKG QVPASATSPQ SAPPRRSCRA VSNRGLSPER DGDGDDDESS
201: SPAAWRPSPS PMRRTTCRRR QTSGSMPSGF AVCLSPLVRP IPGRRPVQPP DPGAFSSELR PPPPPPLHSS LSSASVTRCR SRKLADGGRF R
101: PHIGYGYGYG HEKRRAGKFS VLATLFGRHH HHRRPEARHQ ERKKHSWLAG IMPRRRRSKG QVPASATSPQ SAPPRRSCRA VSNRGLSPER DGDGDDDESS
201: SPAAWRPSPS PMRRTTCRRR QTSGSMPSGF AVCLSPLVRP IPGRRPVQPP DPGAFSSELR PPPPPPLHSS LSSASVTRCR SRKLADGGRF R
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.