CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX74346
CDX80461
CDX80585
CDX87033
CDX88238
CDX90305
CDX91895
CDY05402
CDY05452
CDY07202
CDY10766
CDY12116
CDY19757
CDY22394
CDY51144
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	CDY10766	AT1G06390.1	21798944
AT3G60200.1	CDX74346	AT4G00720.1	21798944
AT3G60200.1	CDX91895	AT4G00720.1	21798944
AT3G60200.1	CDY07202	AT4G00720.1	21798944
AT3G60200.1	CDY51144	AT4G00720.1	21798944
AT3G60200.1	CDX72718	AT4G39050.1	21798944
AT3G60200.1	CDX90305	AT4G39050.1	21798944
AT3G60200.1	CDY12116	AT4G39050.1	21798944
AT3G60200.1	CDY22394	AT4G39050.1	21798944
AT3G60200.1	CDX80461	AT5G24660.1	21798944
AT3G60200.1	CDY05402	AT5G24660.1	21798944
AT3G60200.1	CDY05452	AT5G24660.1	21798944
AT3G60200.1	CDY69515	AT5G24660.1	21798944
AT3G60200.1	CDX80585	AT5G26751.1	21798944
AT3G60200.1	CDX87033	AT5G26751.1	21798944
AT3G60200.1	CDX88238	AT5G26751.1	21798944
AT3G60200.1	CDY19757	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003403.1-P	Field mustard	cytosol	97.14	96.75
CDX98409	Canola	nucleus	91.02	92.53
CDX89054	Canola	cytosol	65.71	55.33
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	61.22	55.15
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	60.82	54.98
CDY42673	Canola	nucleus	61.22	51.9
KRH66386	Soybean	mitochondrion	13.88	48.57
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	57.55	46.23
CDY30478	Canola	nucleus	41.63	41.3
CDY48240	Canola	plastid	45.71	40.58
CDX74671	Canola	plastid	46.53	40.57
CDY23445	Canola	nucleus	39.59	39.59
KRH48907	Soybean	nucleus	36.33	32.25
KRH00975	Soybean	nucleus	37.14	30.23
KRH40251	Soybean	cytosol	38.37	30.23
VIT_15s0021g00520.t01	Wine grape	nucleus	37.14	30.03
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	36.33	28.9
Zm00001d047060_P001	Maize	nucleus	27.35	28.88
PGSC0003DMT400004234	Potato	nucleus	36.33	28.53
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	30.61	26.32
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	31.02	26.21
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	30.2	25.69
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	29.8	25.26
EES05698	Sorghum	nucleus	31.02	24.76
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	21.22	24.64
TraesCS2D01G451800.1	Wheat	nucleus	28.16	24.38
Zm00001d051505_P001	Maize	nucleus	28.57	24.05
TraesCS2B01G473100.1	Wheat	cytosol	27.35	24.01
Zm00001d017657_P001	Maize	nucleus	27.76	23.94
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	27.76	23.86
Zm00001d002512_P001	Maize	cytosol	27.76	23.69
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	26.53	23.13
HORVU1Hr1G054570.1	Barley	nucleus	25.31	22.88
EES12746	Sorghum	nucleus	27.35	22.64
Zm00001d030004_P001	Maize	mitochondrion, nucleus	27.35	22.48
GSMUA_Achr2P04810_001	Banana	nucleus	26.94	22.37
Os04t0588000-00	Rice	nucleus	13.88	22.37
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	26.12	22.3
Os10t0567600-01	Rice	plasma membrane	26.53	22.26
TraesCS1B01G227800.1	Wheat	nucleus	25.31	22.06
GSMUA_Achr10P...	Banana	nucleus	26.12	21.92
GSMUA_Achr3P27500_001	Banana	cytosol	25.31	20.6
EER91903	Sorghum	nucleus	26.12	19.75
HORVU7Hr1G082390.1	Barley	nucleus	24.49	17.65

Protein Annotations

EnsemblPlants:CDY64077	EnsemblPlantsGene:GSBRNA2T00040859001	PANTHER:PTHR35486	ProteinID:CDY64077	ProteinID:CDY64077.1	SEG:seg
UniParc:UPI0004EE88B6	UniProt:A0A078JG06	MapMan:35.2	:	:	:

Description

BnaAnng19180DBnaAnng19180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JG06]

Coordinates

chrLK034397:-:4320..5057

Molecular Weight (calculated)

26188.9 Da

IEP (calculated)

10.851

GRAVY (calculated)

-0.724

Length

245 amino acids

Sequence
(BLAST)

001: MRCKRHAVDL TSTVGVCASC LHERLLSLAA SIAVEENNNN RLSRKSSNPP PPPLPHRSDA GGGDLGVSGK DFESREKSKG GSVSRISNPF RARSDSNPKS
101: ESSSSSSRSW ISSFLSTGRS KKQPAIEDVI SGCRGMSPAR DTGAEDGSEV PCGSIEETPG RPRRTPAVKT PGRRKIMTGM GFCLSPLVRA RPNCPFKRKS
201: RFPSEFVGNA GEVAAAEKPH ISEAASFCAN RSKKLADLGK GNHRR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.