Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0205700-01 | |
| Os05t0207500-01 | |
| Os10t0512800-01 | |
| Os10t0521700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G60200.1 | Os01t0205700-01 | AT1G06390.1 | 21798944 |
| AT3G60200.1 | Os05t0207500-01 | AT1G06390.1 | 21798944 |
| AT3G60200.1 | Os10t0521700-01 | AT4G00720.1 | 21798944 |
| AT3G60200.1 | Os10t0512800-01 | AT4G39050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002512_P001 | Maize | cytosol | 64.47 | 34.15 |
| EES12746 | Sorghum | nucleus | 63.16 | 32.43 |
| TraesCS2D01G451800.1 | Wheat | nucleus | 58.55 | 31.45 |
| TraesCS2A01G452000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 57.24 | 30.53 |
| Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 57.24 | 30.0 |
| TraesCS2B01G473100.1 | Wheat | cytosol | 51.32 | 27.96 |
| Os10t0567600-01 | Rice | plasma membrane | 43.42 | 22.6 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 30.92 | 22.27 |
| Bra004849.1-P | Field mustard | plastid | 34.87 | 18.86 |
| CDX74671 | Canola | plastid | 34.87 | 18.86 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 36.18 | 18.15 |
| CDY48240 | Canola | plastid | 32.89 | 18.12 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 31.58 | 17.65 |
| Bra007514.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 31.58 | 17.58 |
| CDY23445 | Canola | nucleus | 28.29 | 17.55 |
| KRH48907 | Soybean | nucleus | 30.92 | 17.03 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 30.26 | 16.97 |
| KRH00975 | Soybean | nucleus | 33.55 | 16.94 |
| KRH40251 | Soybean | cytosol | 34.21 | 16.72 |
| CDY30478 | Canola | nucleus | 26.97 | 16.6 |
| Bra037642.1-P | Field mustard | nucleus | 26.32 | 16.26 |
| AT3G60200.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 30.92 | 15.41 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 30.92 | 15.26 |
| CDY42673 | Canola | nucleus | 28.95 | 15.22 |
| CDX89054 | Canola | cytosol | 28.95 | 15.12 |
| Bra014506.1-P | Field mustard | cytosol | 28.95 | 15.12 |
| PGSC0003DMT400004234 | Potato | nucleus | 30.92 | 15.06 |
| CDY64077 | Canola | cytosol | 22.37 | 13.88 |
| Bra003403.1-P | Field mustard | cytosol | 22.37 | 13.82 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 28.29 | 13.74 |
| CDX98409 | Canola | nucleus | 21.05 | 13.28 |
| KRH66386 | Soybean | mitochondrion | 2.63 | 5.71 |
Protein Annotations
| EnsemblPlants:Os04t0588000-00 | EnsemblPlantsGene:Os04g0588000 | InterPro:UPF0503 | PANTHER:PTHR31659 | PANTHER:PTHR31659:SF7 | PFAM:PF05340 |
| ProteinID:BAH92800.1 | ProteinID:BAS90720.1 | ProteinID:CAE04325.1 | SEG:seg | UniParc:UPI00001B1E02 | UniProt:Q7XN17 |
| MapMan:35.2 | : | : | : | : | : |
Description
Similar to transposon protein. (Os04t0588000-00)
Coordinates
chr4:-:29716970..29717428
Molecular Weight (calculated)
16427.6 Da
IEP (calculated)
10.645
GRAVY (calculated)
-0.514
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MKCSRHPYEG GVGVCAPCLR DRLLALAAAQ NEASSLPPPP EPVPVFPRSV SPYVCRRKSD ASGARRRTPS LLFFRTPQVG PAYGGGGGGG GGAGGFEEGD
101: IEFEIRRRSS KFSVLAALFG AHRQHGSEEK RSSKERKHRS WLAAIMAPWW PP
101: IEFEIRRRSS KFSVLAALFG AHRQHGSEEK RSSKERKHRS WLAAIMAPWW PP
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.