CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX74346
CDX80461
CDX80585
CDX87033
CDX88238
CDX90305
CDX91895
CDY05402
CDY05452
CDY07202
CDY10766
CDY12116
CDY19757
CDY22394
CDY51144
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	CDY10766	AT1G06390.1	21798944
AT3G60200.1	CDX74346	AT4G00720.1	21798944
AT3G60200.1	CDX91895	AT4G00720.1	21798944
AT3G60200.1	CDY07202	AT4G00720.1	21798944
AT3G60200.1	CDY51144	AT4G00720.1	21798944
AT3G60200.1	CDX72718	AT4G39050.1	21798944
AT3G60200.1	CDX90305	AT4G39050.1	21798944
AT3G60200.1	CDY12116	AT4G39050.1	21798944
AT3G60200.1	CDY22394	AT4G39050.1	21798944
AT3G60200.1	CDX80461	AT5G24660.1	21798944
AT3G60200.1	CDY05402	AT5G24660.1	21798944
AT3G60200.1	CDY05452	AT5G24660.1	21798944
AT3G60200.1	CDY69515	AT5G24660.1	21798944
AT3G60200.1	CDX80585	AT5G26751.1	21798944
AT3G60200.1	CDX87033	AT5G26751.1	21798944
AT3G60200.1	CDX88238	AT5G26751.1	21798944
AT3G60200.1	CDY19757	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64077	Canola	cytosol	92.53	91.02
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	61.41	54.41
CDX89054	Canola	cytosol	65.56	54.3
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	61.0	54.24
CDY42673	Canola	nucleus	61.0	50.87
KRH66386	Soybean	mitochondrion	14.11	48.57
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	58.09	45.9
CDY30478	Canola	nucleus	43.15	42.11
CDY48240	Canola	plastid	47.3	41.3
CDY23445	Canola	nucleus	41.91	41.22
CDX74671	Canola	plastid	47.3	40.57
KRH48907	Soybean	nucleus	36.51	31.88
KRH40251	Soybean	cytosol	40.25	31.19
KRH00975	Soybean	nucleus	38.59	30.9
VIT_15s0021g00520.t01	Wine grape	nucleus	38.17	30.36
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	36.93	28.9
PGSC0003DMT400004234	Potato	nucleus	36.93	28.53
Zm00001d047060_P001	Maize	nucleus	26.14	27.16
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	30.71	25.96
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	31.12	25.86
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	30.29	25.35
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	30.29	25.26
EES05698	Sorghum	nucleus	31.54	24.76
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	20.75	23.7
Zm00001d002512_P001	Maize	cytosol	28.22	23.69
Zm00001d017657_P001	Maize	nucleus	27.8	23.59
Zm00001d051505_P001	Maize	nucleus	28.22	23.37
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	26.97	23.13
TraesCS2D01G451800.1	Wheat	nucleus	26.97	22.97
TraesCS2B01G473100.1	Wheat	cytosol	26.56	22.94
HORVU1Hr1G054570.1	Barley	nucleus	25.73	22.88
GSMUA_Achr10P...	Banana	nucleus	27.39	22.6
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.56	22.46
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	26.56	22.3
TraesCS1B01G227800.1	Wheat	nucleus	25.73	22.06
GSMUA_Achr2P04810_001	Banana	nucleus	26.97	22.03
EES12746	Sorghum	nucleus	26.97	21.96
Os10t0567600-01	Rice	plasma membrane	26.14	21.58
Zm00001d030004_P001	Maize	mitochondrion, nucleus	26.14	21.14
Os04t0588000-00	Rice	nucleus	13.28	21.05
GSMUA_Achr3P27500_001	Banana	cytosol	25.73	20.6
EER91903	Sorghum	nucleus	25.73	19.14
HORVU7Hr1G082390.1	Barley	nucleus	24.9	17.65

Protein Annotations

EnsemblPlants:CDX98409	EnsemblPlantsGene:GSBRNA2T00105995001	PANTHER:PTHR35486	ProteinID:CDX98409	ProteinID:CDX98409.1	SEG:seg
UniParc:UPI0004EDB6A0	MapMan:35.2	:	:	:	:

Description

BnaC06g17700D

Coordinates

chrLK031904:+:1157100..1157825

Molecular Weight (calculated)

25610.1 Da

IEP (calculated)

10.906

GRAVY (calculated)

-0.726

Length

241 amino acids

Sequence
(BLAST)

001: MRCKRHTVDL TSTGGVCASC LHERLLSLAA SIAVEENNNH RLSRKSSNPP PPLPRSDAGG GGGDLGVSGK DFESKGGSVS RISNPFRARS DSNPKSESSS
101: SSSRSWISSF LSTGRSKKQP AIDDVISGCR GMSPARDTGA EDGNEVPSGS IEETPGRTRR TPAVKTPGRR KIMTGMGFCL SPLVRARPNC PFKRKSRFPS
201: EFVGNAGEVT AAEKPHISEA ASFCANRSKK LADLGKGNHR R

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.