CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72718
CDX74346
CDX80461
CDX80585
CDX87033
CDX88238
CDX90305
CDX91895
CDY05402
CDY05452
CDY07202
CDY10766
CDY12116
CDY19757
CDY22394
CDY51144
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	CDY10766	AT1G06390.1	21798944
AT3G60200.1	CDX74346	AT4G00720.1	21798944
AT3G60200.1	CDX91895	AT4G00720.1	21798944
AT3G60200.1	CDY07202	AT4G00720.1	21798944
AT3G60200.1	CDY51144	AT4G00720.1	21798944
AT3G60200.1	CDX72718	AT4G39050.1	21798944
AT3G60200.1	CDX90305	AT4G39050.1	21798944
AT3G60200.1	CDY12116	AT4G39050.1	21798944
AT3G60200.1	CDY22394	AT4G39050.1	21798944
AT3G60200.1	CDX80461	AT5G24660.1	21798944
AT3G60200.1	CDY05402	AT5G24660.1	21798944
AT3G60200.1	CDY05452	AT5G24660.1	21798944
AT3G60200.1	CDY69515	AT5G24660.1	21798944
AT3G60200.1	CDX80585	AT5G26751.1	21798944
AT3G60200.1	CDX87033	AT5G26751.1	21798944
AT3G60200.1	CDX88238	AT5G26751.1	21798944
AT3G60200.1	CDY19757	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89054	Canola	cytosol	87.89	87.29
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	63.32	67.53
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	63.32	67.28
CDY64077	Canola	cytosol	51.9	61.22
CDX98409	Canola	nucleus	50.87	61.0
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	61.94	58.69
CDY48240	Canola	plastid	46.02	48.19
CDX74671	Canola	plastid	46.71	48.04
CDY30478	Canola	nucleus	40.83	47.77
CDY23445	Canola	nucleus	40.48	47.76
KRH66386	Soybean	mitochondrion	10.03	41.43
VIT_15s0021g00520.t01	Wine grape	nucleus	38.06	36.3
KRH48907	Soybean	nucleus	33.56	35.14
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	37.02	34.74
KRH40251	Soybean	cytosol	37.02	34.41
PGSC0003DMT400004234	Potato	nucleus	37.02	34.29
KRH00975	Soybean	nucleus	35.64	34.22
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	32.87	32.76
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	30.1	30.53
TraesCS2B01G473100.1	Wheat	cytosol	29.41	30.47
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.76	30.18
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	29.41	29.51
TraesCS2D01G451800.1	Wheat	nucleus	28.72	29.33
Zm00001d047060_P001	Maize	nucleus	23.53	29.31
Os04t0588000-00	Rice	nucleus	15.22	28.95
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	28.72	28.72
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	20.76	28.44
Zm00001d051505_P001	Maize	nucleus	28.37	28.18
EES05698	Sorghum	nucleus	29.76	28.01
Zm00001d002512_P001	Maize	cytosol	27.68	27.87
Zm00001d017657_P001	Maize	nucleus	27.34	27.82
GSMUA_Achr2P04810_001	Banana	nucleus	28.03	27.46
GSMUA_Achr3P27500_001	Banana	cytosol	28.37	27.24
GSMUA_Achr10P...	Banana	nucleus	27.34	27.05
EES12746	Sorghum	nucleus	27.68	27.03
Zm00001d030004_P001	Maize	mitochondrion, nucleus	26.3	25.5
Os10t0567600-01	Rice	plasma membrane	25.61	25.34
HORVU1Hr1G054570.1	Barley	nucleus	23.53	25.09
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	23.53	24.2
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	23.53	23.69
TraesCS1B01G227800.1	Wheat	nucleus	22.49	23.13
EER91903	Sorghum	nucleus	25.61	22.84
HORVU7Hr1G082390.1	Barley	nucleus	22.15	18.82

Protein Annotations

EnsemblPlants:CDY42673	EnsemblPlantsGene:GSBRNA2T00075193001	PANTHER:PTHR35486	ProteinID:CDY42673	ProteinID:CDY42673.1	SEG:seg
UniParc:UPI0004EECA90	UniProt:A0A078I0Q6	MapMan:35.2	:	:	:

Description

BnaC04g22330DBnaC04g22330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0Q6]

Coordinates

chrLK032531:+:182435..183426

Molecular Weight (calculated)

32039.0 Da

IEP (calculated)

10.873

GRAVY (calculated)

-0.729

Length

289 amino acids

Sequence
(BLAST)

001: MRCKRHTVDF TSNLGGVCAS CLRERLLSLA AHAAAEDNNS NRQPRKSNKP PPLLIFPRSV SPYVTGRKSD AGGGDRRFLA APQVDLGFSC KDFESHRSSK
101: SKGGKASRIS NLFRARSEDY GSDRKPVSIN YGSDRKPVSR FSCDGSESSW FSSFLSTVRS KKQPTTACYV EDAISGHRRP QRVFCRGMSP ARDENEPPSE
201: SVEETPRRTP ATKTPGRTKI VTGMRFCLSP LVRAKPHCPF KRKTRFPSEV VGSAGEVTVL EKPHIAEAVS FCANRSKKLV DLGRVHHRR

Best Arabidopsis Sequence Match ( AT3G60200.1 )
(BLAST)

001: MRCKRHTVDL SSSNGVCASC LRERLLSLAA SAAVSAAVED NQSKKSNNNN HPPLLIFPRS VSPYVTRRKS DAGAGGGDPL VSSNRRFITT PQIDLVGYSC
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR

Arabidopsis Description

Uncharacterized protein At3g60200 [Source:UniProtKB/TrEMBL;Acc:Q9M1C3]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.