Factsheet for TraesCS6A01G263100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G125000.1
TraesCS1A01G177600.1
TraesCS1A01G189000.1
TraesCS1B01G142300.1
TraesCS1B01G196700.3
TraesCS1B01G202600.1
TraesCS1B01G361800.1
TraesCS1D01G129000.2
TraesCS1D01G176100.1
TraesCS1D01G187400.1
TraesCS3A01G136500.1
TraesCS3D01G137200.1
TraesCS4A01G361100.1
TraesCS4A01G365100.1
TraesCS5A01G259000.1
TraesCS5B01G230700.1
TraesCS5B01G511800.1
TraesCS5D01G512300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	TraesCS1A01G125000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G142300.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G361800.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1D01G129000.2	AT1G06390.1	21798944
AT3G60200.1	TraesCS3A01G136500.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS3D01G137200.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS4A01G365100.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5A01G259000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5B01G230700.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1A01G189000.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1B01G196700.3	AT4G00720.1	21798944
AT3G60200.1	TraesCS1D01G187400.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1D01G176100.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS4A01G361100.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5B01G511800.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5D01G512300.2	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	92.73	93.06
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	89.27	90.53
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	72.32	72.07
Zm00001d017657_P001	Maize	nucleus	69.55	70.77
Zm00001d051505_P001	Maize	nucleus	64.01	63.57
EES05698	Sorghum	nucleus	67.47	63.52
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.56	52.28
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	35.99	37.01
KRH66386	Soybean	mitochondrion	8.65	35.71
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	32.18	34.19
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	32.18	34.07
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	31.49	33.58
KRH00975	Soybean	nucleus	34.6	33.22
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	24.22	33.18
KRH40251	Soybean	cytosol	35.29	32.8
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	34.26	32.14
KRH48907	Soybean	nucleus	30.1	31.52
PGSC0003DMT400004234	Potato	nucleus	33.91	31.41
VIT_15s0021g00520.t01	Wine grape	nucleus	32.53	31.02
CDY48240	Canola	plastid	29.07	30.43
CDX98409	Canola	nucleus	25.26	30.29
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	31.83	30.16
CDX74671	Canola	plastid	29.07	29.89
Bra004849.1-P	Field mustard	plastid	29.07	29.89
CDY64077	Canola	cytosol	25.26	29.8
CDX89054	Canola	cytosol	29.76	29.55
Bra003403.1-P	Field mustard	cytosol	24.91	29.27
Bra014506.1-P	Field mustard	cytosol	29.41	29.21
CDY42673	Canola	nucleus	28.72	28.72
CDY30478	Canola	nucleus	24.22	28.34
CDY23445	Canola	nucleus	23.53	27.76
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	29.76	27.48
Bra037642.1-P	Field mustard	nucleus	22.84	26.83

Protein Annotations

EnsemblPlants:TraesCS6A01G263100.1	EnsemblPlantsGene:TraesCS6A01G263100	InterPro:UPF0503	PANTHER:PTHR31659	PANTHER:PTHR31659:SF2	PFAM:PF05340
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:486278844..486279713

Molecular Weight (calculated)

31165.1 Da

IEP (calculated)

11.961

GRAVY (calculated)

-0.756

Length

289 amino acids

Sequence
(BLAST)

001: MGMRCKRHPF QAGGGICATC LRDRLLVLAA AQNDASSTPS TPPATAPPPP AEAAPAPAFP RSVSPYVSRR KSDSSGGALR HHPSLLFFRT PQVGPAYGGS
101: APLEEGDIGY HKPRAGKFSV LATLFGSHHH RRHGPEDKDK AKERKKSRSW LAGIIPRRRR KQVPADAVLP ASPPPRRSCR VVSNRGLSPE RCSQGSGEES
201: SSPADPPWRP SPSPMRRTPC RRRQTSSMPS GFAVCLSPLV RPSPGRRHRA AQPPDSGTFS SELRPSPLHS AASVGRCRSR KLADGARFR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.