Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 96.31 | 95.96 |
| CDY42673 | Canola | nucleus | 67.53 | 63.32 |
| AT3G60200.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 70.48 | 62.62 |
| CDX89054 | Canola | cytosol | 66.79 | 62.2 |
| CDX98409 | Canola | nucleus | 54.24 | 61.0 |
| CDY64077 | Canola | cytosol | 54.98 | 60.82 |
| CDY48240 | Canola | plastid | 50.55 | 49.64 |
| CDX74671 | Canola | plastid | 50.55 | 48.75 |
| CDY23445 | Canola | nucleus | 42.44 | 46.94 |
| CDY30478 | Canola | nucleus | 41.7 | 45.75 |
| KRH66386 | Soybean | mitochondrion | 11.07 | 42.86 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 43.54 | 38.94 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 41.33 | 36.36 |
| KRH40251 | Soybean | cytosol | 41.7 | 36.33 |
| PGSC0003DMT400004234 | Potato | nucleus | 41.7 | 36.22 |
| KRH00975 | Soybean | nucleus | 40.22 | 36.21 |
| KRH48907 | Soybean | nucleus | 35.06 | 34.42 |
| Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 35.79 | 33.45 |
| TraesCS6D01G243600.1 | Wheat | mitochondrion, nucleus | 34.69 | 32.98 |
| TraesCS6B01G290200.1 | Wheat | mitochondrion, nucleus | 34.32 | 32.29 |
| TraesCS2B01G473100.1 | Wheat | cytosol | 33.21 | 32.26 |
| TraesCS2D01G451800.1 | Wheat | nucleus | 33.58 | 32.16 |
| Zm00001d002512_P001 | Maize | cytosol | 33.58 | 31.71 |
| TraesCS6A01G263100.1 | Wheat | mitochondrion, nucleus | 33.58 | 31.49 |
| TraesCS2A01G452000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 32.84 | 31.23 |
| Zm00001d017657_P001 | Maize | nucleus | 32.47 | 30.99 |
| Os04t0588000-00 | Rice | nucleus | 16.97 | 30.26 |
| EES12746 | Sorghum | nucleus | 32.84 | 30.07 |
| Zm00001d047060_P001 | Maize | nucleus | 25.46 | 29.74 |
| Zm00001d051505_P001 | Maize | nucleus | 31.37 | 29.21 |
| EES05698 | Sorghum | nucleus | 32.84 | 28.99 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 22.14 | 28.44 |
| GSMUA_Achr3P27500_001 | Banana | cytosol | 31.0 | 27.91 |
| GSMUA_Achr2P04810_001 | Banana | nucleus | 30.26 | 27.8 |
| GSMUA_Achr10P... | Banana | nucleus | 28.78 | 26.71 |
| HORVU1Hr1G054570.1 | Barley | nucleus | 26.2 | 26.2 |
| Zm00001d030004_P001 | Maize | mitochondrion, nucleus | 28.04 | 25.5 |
| TraesCS1A01G214000.1 | Wheat | mitochondrion, nucleus | 26.2 | 25.27 |
| Os10t0567600-01 | Rice | plasma membrane | 26.94 | 25.0 |
| TraesCS1D01G216900.1 | Wheat | mitochondrion, nucleus | 25.46 | 24.04 |
| TraesCS1B01G227800.1 | Wheat | nucleus | 24.35 | 23.49 |
| EER91903 | Sorghum | nucleus | 27.31 | 22.84 |
| HORVU7Hr1G082390.1 | Barley | nucleus | 23.62 | 18.82 |
Protein Annotations
| EnsemblPlants:CDX71830 | EnsemblPlantsGene:GSBRNA2T00155553001 | PANTHER:PTHR35486 | ProteinID:CDX71830 | ProteinID:CDX71830.1 | SEG:seg |
| UniParc:UPI0004EF165B | MapMan:35.2 | : | : | : | : |
Description
BnaC08g30440D
Coordinates
chrLK031795:-:762470..763346
Molecular Weight (calculated)
29770.2 Da
IEP (calculated)
11.012
GRAVY (calculated)
-0.692
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MRCKRHTVDL SSTAGVCASC LRERLLSLAA SAAVTEDHNQ SRKSNNLIFP RSVSPYVARR KSDVGGGGGN RRFITTPQVD TGFSCKDFES NRSSKPRSGK
101: ASRISSLFRA RSDDFDSDTK SRVSCSSSSS SRSWISSFLS KKQPTACYIE DVISPRRPQR VYCRGMSPAR DTEAGEEENE PRRTPAMKTP GRRNIAAGIG
201: RSISGMGFCL SPLVRASPNC PFKRKIRFPS EFNGNGGEVT VPEKPHIAEA ASFCANRSKK LVDIGRVNHR R
101: ASRISSLFRA RSDDFDSDTK SRVSCSSSSS SRSWISSFLS KKQPTACYIE DVISPRRPQR VYCRGMSPAR DTEAGEEENE PRRTPAMKTP GRRNIAAGIG
201: RSISGMGFCL SPLVRASPNC PFKRKIRFPS EFNGNGGEVT VPEKPHIAEA ASFCANRSKK LVDIGRVNHR R
001: MRCKRHTVDL SSSNGVCASC LRERLLSLAA SAAVSAAVED NQSKKSNNNN HPPLLIFPRS VSPYVTRRKS DAGAGGGDPL VSSNRRFITT PQIDLVGYSC
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR
101: KDFESNRSNK SKQGKKVSRF SNLFRARSED FDTNPKSNNP RFSSCDASEI SSSSSSSRSW ISTILSTGRR KKQPTTACYI EDVIAARRPQ RIYCRGMSPV
201: RDTEPEQSAE SIEELRRTPA TKTPGRRKIA MGIGKSMSGM AFCLSPLVRA SPNCPFKRKM RFPSEFGNSG EVTAVPEKPH ISAAASFCAN RSKKLVDLGR
301: VDRRR
Arabidopsis Description
Uncharacterized protein At3g60200 [Source:UniProtKB/TrEMBL;Acc:Q9M1C3]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.