CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90477
KRG96686
KRH00638
KRH16959
KRH22265
KRH24392
KRH25797
KRH27067
KRH29374
KRH33767
KRH40543
KRH48234
KRH51475
KRH53667
KRH55721
KRH60786
KRH64261
KRH65140
KRH68409

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	KRH22265	AT1G06390.1	21798944
AT3G60200.1	KRH25797	AT1G06390.1	21798944
AT3G60200.1	KRH27067	AT1G06390.1	21798944
AT3G60200.1	KRH55721	AT1G06390.1	21798944
AT3G60200.1	KRH00638	AT4G00720.1	21798944
AT3G60200.1	KRH40543	AT4G00720.1	21798944
AT3G60200.1	KRH48234	AT4G00720.1	21798944
AT3G60200.1	KRH65140	AT4G00720.1	21798944
AT3G60200.1	KRH24392	AT4G39050.1	21798944
AT3G60200.1	KRH29374	AT4G39050.1	21798944
AT3G60200.1	KRH51475	AT4G39050.1	21798944
AT3G60200.1	KRH60786	AT4G39050.1	21798944
AT3G60200.1	KRH16959	AT5G24660.1	21798944
AT3G60200.1	KRH53667	AT5G24660.1	21798944
AT3G60200.1	KRH64261	AT5G24660.1	21798944
AT3G60200.1	KRG90477	AT5G26751.1	21798944
AT3G60200.1	KRG96686	AT5G26751.1	21798944
AT3G60200.1	KRH33767	AT5G26751.1	21798944
AT3G60200.1	KRH68409	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48907	Soybean	nucleus	78.57	19.93
Bra003403.1-P	Field mustard	cytosol	50.0	14.23
CDX98409	Canola	nucleus	48.57	14.11
CDY64077	Canola	cytosol	48.57	13.88
KRH00975	Soybean	nucleus	57.14	13.29
KRH40251	Soybean	cytosol	58.57	13.18
Bra037642.1-P	Field mustard	nucleus	44.29	12.6
VIT_15s0021g00520.t01	Wine grape	nucleus	52.86	12.21
CDY30478	Canola	nucleus	42.86	12.15
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	52.86	12.01
CDY48240	Canola	plastid	47.14	11.96
PGSC0003DMT400004234	Potato	nucleus	52.86	11.86
CDX74671	Canola	plastid	47.14	11.74
Bra004849.1-P	Field mustard	plastid	47.14	11.74
CDY23445	Canola	nucleus	40.0	11.43
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	42.86	11.07
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	42.86	11.03
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	47.14	10.82
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.43	10.62
CDY42673	Canola	nucleus	41.43	10.03
Zm00001d047060_P001	Maize	nucleus	32.86	9.91
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	44.29	9.9
Zm00001d017657_P001	Maize	nucleus	40.0	9.86
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	40.0	9.66
CDX89054	Canola	cytosol	40.0	9.62
Bra014506.1-P	Field mustard	cytosol	40.0	9.62
GSMUA_Achr2P04810_001	Banana	nucleus	38.57	9.15
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	37.14	9.12
EES05698	Sorghum	nucleus	40.0	9.12
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	37.14	9.03
TraesCS2B01G473100.1	Wheat	cytosol	35.71	8.96
TraesCS1B01G227800.1	Wheat	nucleus	35.71	8.9
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	35.71	8.9
HORVU1Hr1G054570.1	Barley	nucleus	34.29	8.86
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	35.71	8.71
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	35.71	8.65
TraesCS2D01G451800.1	Wheat	nucleus	34.29	8.48
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	34.29	8.42
GSMUA_Achr3P27500_001	Banana	cytosol	35.71	8.31
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	24.29	8.06
Zm00001d030004_P001	Maize	mitochondrion, nucleus	34.29	8.05
Zm00001d002512_P001	Maize	cytosol	32.86	8.01
Os10t0567600-01	Rice	plasma membrane	32.86	7.88
EER91903	Sorghum	nucleus	35.71	7.72
Zm00001d051505_P001	Maize	nucleus	31.43	7.56
EES12746	Sorghum	nucleus	30.0	7.09
HORVU7Hr1G082390.1	Barley	nucleus	32.86	6.76
GSMUA_Achr10P...	Banana	nucleus	27.14	6.51
Os04t0588000-00	Rice	nucleus	5.71	2.63

Protein Annotations

EMBL:ACUP02001951	EnsemblPlants:KRH66386	EnsemblPlantsGene:GLYMA_03G103000	PANTHER:PTHR35486	ProteinID:KRH66386	ProteinID:KRH66386.1
UniParc:UPI0006EDDB18	UniProt:A0A0R0KM83	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:29608409..29608825

Molecular Weight (calculated)

7452.8 Da

IEP (calculated)

11.906

GRAVY (calculated)

-0.690

Length

70 amino acids

Sequence
(BLAST)

1: MGPTGKGFTS MAFCLNPLVR AGPNRHWSHH NKGLAQEQGG GGAHHISNAA SFCANRSRKL ADFGRGAHNR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.