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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g091620.2.1
Solyc01g101000.2.1
Solyc01g110190.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc04g025600.1.1
Solyc05g051050.2.1
Solyc06g072990.1.1
Solyc07g055200.2.1
Solyc10g054080.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G60200.1 Solyc04g025600.1.1 AT1G06390.1 21798944
AT3G60200.1 Solyc07g055200.2.1 AT1G06390.1 21798944
AT3G60200.1 Solyc01g091620.2.1 AT4G00720.1 21798944
AT3G60200.1 Solyc05g051050.2.1 AT4G00720.1 21798944
AT3G60200.1 Solyc01g110190.2.1 AT4G39050.1 21798944
AT3G60200.1 Solyc10g054080.1.1 AT4G39050.1 21798944
AT3G60200.1 Solyc11g044880.1.1 AT4G39050.1 21798944
AT3G60200.1 Solyc03g096760.1.1 AT5G24660.1 21798944
AT3G60200.1 Solyc03g096770.1.1 AT5G24660.1 21798944
AT3G60200.1 Solyc03g096780.1.1 AT5G24660.1 21798944
AT3G60200.1 Solyc06g072990.1.1 AT5G24660.1 21798944
AT3G60200.1 Solyc01g101000.2.1 AT5G26751.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400004234 Potato nucleus 94.81 93.59
VIT_15s0021g00520.t01 Wine grape nucleus 52.6 53.47
KRH66386 Soybean mitochondrion 12.01 52.86
KRH00975 Soybean nucleus 43.83 44.85
KRH40251 Soybean cytosol 44.81 44.37
CDY48240 Canola plastid 37.66 42.03
CDX71830 Canola cytosol, mitochondrion, nucleus, plastid 36.36 41.33
KRH48907 Soybean nucleus 36.69 40.94
CDX74671 Canola plastid 37.34 40.93
CDY41187 Canola cytosol, mitochondrion, nucleus, plastid 36.04 40.81
Bra007514.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 36.04 40.66
Bra004849.1-P Field mustard plastid 37.01 40.57
AT2G44600.1 Thale cress cytosol, mitochondrion, nucleus, plastid 39.94 39.3
AT3G60200.1 Thale cress cytosol, mitochondrion, nucleus, plastid 37.99 38.36
Bra014506.1-P Field mustard cytosol 35.06 37.11
CDY42673 Canola nucleus 34.74 37.02
Bra037642.1-P Field mustard nucleus 29.55 36.99
CDX98409 Canola nucleus 28.9 36.93
Bra003403.1-P Field mustard cytosol 29.22 36.59
CDY30478 Canola nucleus 29.22 36.44
CDY64077 Canola cytosol 28.9 36.33
CDY23445 Canola nucleus 28.9 36.33
Zm00001d017657_P001 Maize nucleus 33.44 36.27
CDX89054 Canola cytosol 34.09 36.08
EES05698 Sorghum nucleus 34.74 34.85
Os02t0689500-01 Rice cytosol, mitochondrion, nucleus, plastid 32.79 34.83
TraesCS6D01G243600.1 Wheat mitochondrion, nucleus 32.14 34.74
Zm00001d051505_P001 Maize nucleus 32.79 34.71
GSMUA_Achr2P04810_001 Banana nucleus 33.12 34.58
TraesCS6A01G263100.1 Wheat mitochondrion, nucleus 32.14 34.26
TraesCS2B01G473100.1 Wheat cytosol 30.84 34.05
TraesCS6B01G290200.1 Wheat mitochondrion, nucleus 31.82 34.03
TraesCS2D01G451800.1 Wheat nucleus 31.17 33.92
Zm00001d047060_P001 Maize nucleus 25.0 33.19
GSMUA_AchrUn_... Banana cytosol, mitochondrion, nucleus, plastid 22.73 33.18
Zm00001d002512_P001 Maize cytosol 30.19 32.4
EES12746 Sorghum nucleus 30.52 31.76
GSMUA_Achr3P27500_001 Banana cytosol 30.52 31.23
Os04t0588000-00 Rice nucleus 15.26 30.92
TraesCS2A01G452000.1 Wheat cytosol, mitochondrion, nucleus, plastid 28.57 30.88
HORVU1Hr1G054570.1 Barley nucleus 26.62 30.26
GSMUA_Achr10P... Banana nucleus 28.57 30.14
TraesCS1A01G214000.1 Wheat mitochondrion, nucleus 26.62 29.18
Zm00001d030004_P001 Maize mitochondrion, nucleus 27.92 28.86
TraesCS1D01G216900.1 Wheat mitochondrion, nucleus 26.62 28.57
TraesCS1B01G227800.1 Wheat nucleus 25.97 28.47
EER91903 Sorghum nucleus 28.25 26.85
Os10t0567600-01 Rice plasma membrane 25.0 26.37
HORVU7Hr1G082390.1 Barley nucleus 25.0 22.65
Protein Annotations
EnsemblPlants:Solyc01g088530.2.1EnsemblPlantsGene:Solyc01g088530.2PANTHER:PTHR35486SEG:segUniParc:UPI000276195FUniProt:K4AYP3
MapMan:35.2:::::
Description
No Description!
Coordinates
chr1:+:83305140..83306385
Molecular Weight (calculated)
34515.5 Da
IEP (calculated)
11.124
GRAVY (calculated)
-0.928
Length
308 amino acids
Sequence
(BLAST)
001: MRCKKHLSDL SSSVGVCASC LRERLFAVMA AQAQAQAQVQ QQLFPEDHRK ADGNPPPLMF PRSVSPYISR RKSDTTPWQL QHNSLPSIRD QRFYSTPQVG
101: PNGTVIAAGP YKKKSYFRFF SGLFRSKSDK LDLDRRVSNS GDNCPASSSS PSWFTTILSG RRKKQSRTFS LEESTIGGHR KTHRNRDRGM SPARYSDDEE
201: DEHCGGSSGY SSESSQGWKQ TPRRTPAAQP GRRGKSSHNR NISGMAFCLS PLVRASPSRN WNQKGMPPEM VFSGEIRVTS KPQLSTATSF CKNRSRKLAD
301: FGRFNPNR
Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.