Factsheet for TraesCS2D01G451800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G125000.1
TraesCS1A01G177600.1
TraesCS1A01G189000.1
TraesCS1B01G142300.1
TraesCS1B01G196700.3
TraesCS1B01G202600.1
TraesCS1B01G361800.1
TraesCS1D01G129000.2
TraesCS1D01G176100.1
TraesCS1D01G187400.1
TraesCS3A01G136500.1
TraesCS3D01G137200.1
TraesCS4A01G361100.1
TraesCS4A01G365100.1
TraesCS5A01G259000.1
TraesCS5B01G230700.1
TraesCS5B01G511800.1
TraesCS5D01G512300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	TraesCS1A01G125000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G142300.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1B01G361800.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1D01G129000.2	AT1G06390.1	21798944
AT3G60200.1	TraesCS3A01G136500.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS3D01G137200.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS4A01G365100.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5A01G259000.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS5B01G230700.1	AT1G06390.1	21798944
AT3G60200.1	TraesCS1A01G189000.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1B01G196700.3	AT4G00720.1	21798944
AT3G60200.1	TraesCS1D01G187400.1	AT4G00720.1	21798944
AT3G60200.1	TraesCS1A01G177600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1B01G202600.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS1D01G176100.1	AT4G39050.1	21798944
AT3G60200.1	TraesCS4A01G361100.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5B01G511800.1	AT5G26751.1	21798944
AT3G60200.1	TraesCS5D01G512300.2	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G473100.1	Wheat	cytosol	88.69	89.96
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	90.46	89.82
Os04t0588000-00	Rice	nucleus	31.45	58.55
EES12746	Sorghum	nucleus	59.72	57.09
Zm00001d002512_P001	Maize	cytosol	57.24	56.45
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	54.77	54.39
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	37.1	36.59
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	33.92	35.29
KRH66386	Soybean	mitochondrion	8.48	34.29
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	32.51	33.7
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	32.16	33.58
KRH48907	Soybean	nucleus	31.45	32.25
VIT_15s0021g00520.t01	Wine grape	nucleus	33.92	31.68
KRH00975	Soybean	nucleus	33.57	31.56
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	23.32	31.28
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	33.92	31.17
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	33.57	31.15
CDY48240	Canola	plastid	30.04	30.8
PGSC0003DMT400004234	Potato	nucleus	33.57	30.45
KRH40251	Soybean	cytosol	32.86	29.9
CDX89054	Canola	cytosol	30.74	29.9
CDX74671	Canola	plastid	29.68	29.89
Bra004849.1-P	Field mustard	plastid	29.68	29.89
CDY23445	Canola	nucleus	25.8	29.8
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	32.86	29.71
CDY30478	Canola	nucleus	25.8	29.55
Bra037642.1-P	Field mustard	nucleus	25.09	28.86
CDY42673	Canola	nucleus	29.33	28.72
Bra014506.1-P	Field mustard	cytosol	29.33	28.52
CDY64077	Canola	cytosol	24.38	28.16
Bra003403.1-P	Field mustard	cytosol	24.38	28.05
CDX98409	Canola	nucleus	22.97	26.97

Protein Annotations

EnsemblPlants:TraesCS2D01G451800.1	EnsemblPlantsGene:TraesCS2D01G451800	InterPro:UPF0503	PANTHER:PTHR31659	PANTHER:PTHR31659:SF7	PFAM:PF05340
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:561489562..561490832

Molecular Weight (calculated)

30516.3 Da

IEP (calculated)

11.693

GRAVY (calculated)

-0.746

Length

283 amino acids

Sequence
(BLAST)

001: MRCRTHPYES AVGVCAACLR GRLLALAAAQ NQAPSLPPPP PPPEPVPLFP RSVSPYVCPR KSDAASGPGP WRHPSSRLFF RTPQVGPGTG FEEGDIGFQI
101: RRRRSSKLSA LAALFGGHRQ HQHDGSEEKG ADGGKERKHG SWLAGIMPRA RGRRKEEPPT ESPRPPRRRS SRVISNRGLS PVRCSYEGSE EGGSVADSPW
201: RPSPMRKTPC RRLLGGAGAG VSGFAVCISP LVRPSPARNH HRGPPDAPAL SGELRPSPLH QPSAGSSLHH CRSWKLADGG RFR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.