Factsheet for Zm00001d002512_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008893_P001
Zm00001d013859_P002
Zm00001d029664_P001
Zm00001d032464_P008
Zm00001d039407_P001
Zm00001d048564_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	Zm00001d008893_P001	AT1G06390.1	21798944
AT3G60200.1	Zm00001d039407_P001	AT1G06390.1	21798944
AT3G60200.1	Zm00001d029664_P001	AT4G00720.1	21798944
AT3G60200.1	Zm00001d048564_P003	AT4G00720.1	21798944
AT3G60200.1	Zm00001d013859_P002	AT4G39050.1	21798944
AT3G60200.1	Zm00001d032464_P008	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12746	Sorghum	nucleus	75.61	73.31
Os04t0588000-00	Rice	nucleus	34.15	64.47
TraesCS2D01G451800.1	Wheat	nucleus	56.45	57.24
TraesCS2B01G473100.1	Wheat	cytosol	55.4	56.99
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	55.75	56.14
Zm00001d017657_P001	Maize	nucleus	52.26	52.82
Zm00001d051505_P001	Maize	nucleus	50.87	50.17
Zm00001d030004_P001	Maize	mitochondrion, nucleus	41.81	40.27
Zm00001d047060_P001	Maize	nucleus	30.31	37.5
VIT_15s0021g00520.t01	Wine grape	nucleus	36.93	34.98
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	32.06	33.82
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	31.71	33.58
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	24.39	33.18
KRH66386	Soybean	mitochondrion	8.01	32.86
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	31.01	32.6
KRH00975	Soybean	nucleus	33.1	31.56
KRH40251	Soybean	cytosol	33.1	30.55
CDY48240	Canola	plastid	29.27	30.43
CDX74671	Canola	plastid	29.62	30.25
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	32.4	30.19
PGSC0003DMT400004234	Potato	nucleus	32.75	30.13
KRH48907	Soybean	nucleus	28.92	30.07
Bra004849.1-P	Field mustard	plastid	29.27	29.89
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	31.71	29.84
Bra014506.1-P	Field mustard	cytosol	28.92	28.52
CDX89054	Canola	cytosol	28.92	28.52
CDX98409	Canola	nucleus	23.69	28.22
Bra003403.1-P	Field mustard	cytosol	24.04	28.05
CDY64077	Canola	cytosol	23.69	27.76
CDY23445	Canola	nucleus	23.69	27.76
CDY42673	Canola	nucleus	27.87	27.68
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	29.62	27.16
CDY30478	Canola	nucleus	23.0	26.72
Bra037642.1-P	Field mustard	nucleus	22.65	26.42

Protein Annotations

EnsemblPlants:Zm00001d002512_P001	EnsemblPlants:Zm00001d002512_T001	EnsemblPlantsGene:Zm00001d002512	InterPro:UPF0503	PANTHER:PTHR31659	PANTHER:PTHR31659:SF7
PFAM:PF05340	ProteinID:ONM14594.1	SEG:seg	UniParc:UPI000844ACB2	UniProt:A0A1D6E1Q0	MapMan:35.2

Description

OSJNBb0016D16.16 protein; protein

Coordinates

chr2:+:14429314..14430177

Molecular Weight (calculated)

30971.9 Da

IEP (calculated)

11.256

GRAVY (calculated)

-0.657

Length

287 amino acids

Sequence
(BLAST)

001: MRCARHPYEG GVGVCAPCLR DRLLALAAAQ NAASSLPPPP PPPEEQEPEP VFPRSVSPYV CRRKSDASAP RGRPPGSLLF FRTPQVGPAY GAGSGAGFED
101: GDIGFRRRRG RFSVLAALFG QRSEDDKRRD KEGAKYRSSW WLAGIVPRSR RSGRKDREAG LPPPSPPRRS CRGISGRGLS PVRYTDGDGE ECTSPAESLW
201: LPSPSPMRKT PCRRRSGLGA PGAGVSGFSM CISPLVRPSM ARHLRGGHPP DAIVSGDLRP SPLHPLTSSA SLHHCRSWKL ADGGRFR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.