Factsheet for PGSC0003DMT400004234

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400007088
PGSC0003DMT400008772
PGSC0003DMT400017984
PGSC0003DMT400052647
PGSC0003DMT400069515
PGSC0003DMT400071378

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	PGSC0003DMT400052647	AT1G06390.1	21798944
AT3G60200.1	PGSC0003DMT400017984	AT4G00720.1	21798944
AT3G60200.1	PGSC0003DMT400071378	AT4G00720.1	21798944
AT3G60200.1	PGSC0003DMT400008772	AT4G39050.1	21798944
AT3G60200.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT3G60200.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT3G60200.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT3G60200.1	PGSC0003DMT400069515	AT5G24660.1	21798944
AT3G60200.1	PGSC0003DMT400007088	AT5G26751.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	93.59	94.81
VIT_15s0021g00520.t01	Wine grape	nucleus	51.6	53.14
KRH66386	Soybean	mitochondrion	11.86	52.86
KRH00975	Soybean	nucleus	44.23	45.85
KRH40251	Soybean	cytosol	45.51	45.66
CDY48240	Canola	plastid	37.18	42.03
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	36.22	41.7
KRH48907	Soybean	nucleus	36.86	41.67
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	35.9	41.18
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	35.9	41.03
CDX74671	Canola	plastid	36.86	40.93
Bra004849.1-P	Field mustard	plastid	36.54	40.57
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	40.06	39.94
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	38.14	39.02
Bra014506.1-P	Field mustard	cytosol	34.62	37.11
CDY42673	Canola	nucleus	34.29	37.02
Bra037642.1-P	Field mustard	nucleus	29.17	36.99
CDX98409	Canola	nucleus	28.53	36.93
Zm00001d017657_P001	Maize	nucleus	33.33	36.62
Bra003403.1-P	Field mustard	cytosol	28.85	36.59
CDY64077	Canola	cytosol	28.53	36.33
CDY23445	Canola	nucleus	28.53	36.33
CDX89054	Canola	cytosol	33.65	36.08
CDY30478	Canola	nucleus	28.53	36.03
GSMUA_Achr2P04810_001	Banana	nucleus	33.65	35.59
Zm00001d051505_P001	Maize	nucleus	33.01	35.4
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	31.73	34.74
EES05698	Sorghum	nucleus	33.97	34.53
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	32.05	34.48
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	31.41	34.03
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	31.41	33.91
Zm00001d047060_P001	Maize	nucleus	25.0	33.62
TraesCS2D01G451800.1	Wheat	nucleus	30.45	33.57
TraesCS2B01G473100.1	Wheat	cytosol	29.81	33.33
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	22.44	33.18
Zm00001d002512_P001	Maize	cytosol	30.13	32.75
GSMUA_Achr3P27500_001	Banana	cytosol	30.77	31.89
EES12746	Sorghum	nucleus	29.81	31.42
HORVU1Hr1G054570.1	Barley	nucleus	27.24	31.37
Os04t0588000-00	Rice	nucleus	15.06	30.92
TraesCS2A01G452000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.21	30.88
GSMUA_Achr10P...	Banana	nucleus	28.53	30.48
TraesCS1A01G214000.1	Wheat	mitochondrion, nucleus	27.24	30.25
TraesCS1D01G216900.1	Wheat	mitochondrion, nucleus	27.24	29.62
TraesCS1B01G227800.1	Wheat	nucleus	26.6	29.54
Zm00001d030004_P001	Maize	mitochondrion, nucleus	28.21	29.53
Os10t0567600-01	Rice	plasma membrane	25.0	26.71
EER91903	Sorghum	nucleus	27.56	26.54
HORVU7Hr1G082390.1	Barley	nucleus	25.0	22.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400004234	EnsemblPlantsGene:PGSC0003DMG400001684	EntrezGene:102584533	PANTHER:PTHR35486	PGSC:PGSC0003DMG400001684	RefSeq:XP_006354633.1
SEG:seg	UniParc:UPI00029521C3	UniProt:M0ZN38	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001684]

Coordinates

chr1:+:68370477..68371941

Molecular Weight (calculated)

35078.2 Da

IEP (calculated)

11.250

GRAVY (calculated)

-0.884

Length

312 amino acids

Sequence
(BLAST)

001: MRCKKHLSDL SSSVGVCASC LRERLFAVMA AQAQAQAQAR VQVQQQLFQE DHRKSDGNPP PLMFPRSVSP YISRRKSDTT PWQFQHNSLP SIRDQRFYST
101: PQVGPNGTVI AAGPYKKKSY FRFFSGLFRS KSDKLDLDRR VSNSADACPA SFSSPSWFST ILSGRRKKQS RTFSLEESTI GGHRRTHRNR DRGMSPARYS
201: DDEEDEHCGG SSGYSSESSQ GWKQTPRRTP AAQPGRRGKS SHNRNLSGMA FCLSPLVRAS PSRNWNQKGM PPEMVFSGEI RVTAKPQLSI ASSFCKNRSR
301: KLADFGRFNP NR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.