CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92044
EES00093
KXG38192

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60200.1	EES00093	AT1G06390.1	21798944
AT3G60200.1	EER92044	AT4G00720.1	21798944
AT3G60200.1	KXG38192	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017657_P001	Maize	nucleus	69.38	75.0
Os02t0689500-01	Rice	cytosol, mitochondrion, nucleus, plastid	69.71	73.79
TraesCS6D01G243600.1	Wheat	mitochondrion, nucleus	64.17	69.12
TraesCS6B01G290200.1	Wheat	mitochondrion, nucleus	64.5	68.75
TraesCS6A01G263100.1	Wheat	mitochondrion, nucleus	63.52	67.47
Zm00001d051505_P001	Maize	nucleus	62.54	65.98
EES12746	Sorghum	nucleus	50.16	52.03
KRH66386	Soybean	mitochondrion	9.12	40.0
EER91903	Sorghum	nucleus	37.13	35.19
Solyc01g088530.2.1	Tomato	mitochondrion, nucleus	34.85	34.74
KRH00975	Soybean	nucleus	33.88	34.55
KRH40251	Soybean	cytosol	34.53	34.08
PGSC0003DMT400004234	Potato	nucleus	34.53	33.97
KRH48907	Soybean	nucleus	29.97	33.33
CDY41187	Canola	cytosol, mitochondrion, nucleus, plastid	29.32	33.09
Bra007514.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	29.32	32.97
CDX71830	Canola	cytosol, mitochondrion, nucleus, plastid	28.99	32.84
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	22.48	32.7
VIT_15s0021g00520.t01	Wine grape	nucleus	32.25	32.67
CDX98409	Canola	nucleus	24.76	31.54
CDX89054	Canola	cytosol	29.64	31.27
CDY64077	Canola	cytosol	24.76	31.02
Bra003403.1-P	Field mustard	cytosol	24.76	30.89
CDX74671	Canola	plastid	27.69	30.25
Bra004849.1-P	Field mustard	plastid	27.69	30.25
Bra014506.1-P	Field mustard	cytosol	28.66	30.24
CDY42673	Canola	nucleus	28.01	29.76
CDY48240	Canola	plastid	26.71	29.71
AT3G60200.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	28.99	29.18
AT2G44600.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	29.64	29.07
CDY30478	Canola	nucleus	23.13	28.74
CDY23445	Canola	nucleus	22.48	28.16
Bra037642.1-P	Field mustard	nucleus	22.48	28.05

Protein Annotations

EnsemblPlants:EES05698	EnsemblPlantsGene:SORBI_3004G276700	EntrezGene:8073900	InterPro:UPF0503	PANTHER:PTHR31659	PANTHER:PTHR31659:SF2
PFAM:PF05340	ProteinID:EES05698	ProteinID:EES05698.1	RefSeq:XP_002452722.1	SEG:seg	unigene:Sbi.7917
UniParc:UPI0001A85E67	UniProt:C5Y0T2	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:62012341..62015428

Molecular Weight (calculated)

33539.5 Da

IEP (calculated)

11.300

GRAVY (calculated)

-0.846

Length

307 amino acids

Sequence
(BLAST)

001: MRCKKHPYQA GGGVCATCLC DRLLTLEAAQ NGDASSPPHA QAPPVPPAEP LAFPRSVSPY VSRRKSDTAG ALRHHPSLLF FRTPQVGPAY GGGAGGALEE
101: GDIAYEYEKR RARKFSVLAT LFGHHHHHHH HRSEEKHHHQ QEGAPKERKK RSWTWFAGII PRRRKKQSAA AAAAVSATSP QSAPPRRSSC RAVSNRGLSP
201: ERDSHGGSGD ESSSPAAADH PPWRPSPSPM RRTPCRRRQT NSMPSGFAVC LSPLVRPSPG RRHRHVQPPD PGSFSCELRP SPLHSLSSAA SVTRCRSRKL
301: ADCGRFR

Best Arabidopsis Sequence Match ( AT2G44600.1 )
(BLAST)

001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR

Arabidopsis Description

At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.