Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0588000-00 | Rice | nucleus | 22.27 | 30.92 |
| GSMUA_Achr3P27500_001 | Banana | cytosol | 38.86 | 27.24 |
| Zm00001d047060_P001 | Maize | nucleus | 29.38 | 26.72 |
| TraesCS6B01G290200.1 | Wheat | mitochondrion, nucleus | 34.12 | 25.0 |
| Os02t0689500-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 34.12 | 24.83 |
| TraesCS6D01G243600.1 | Wheat | mitochondrion, nucleus | 33.18 | 24.56 |
| GSMUA_Achr2P04810_001 | Banana | nucleus | 34.12 | 24.41 |
| Zm00001d002512_P001 | Maize | cytosol | 33.18 | 24.39 |
| KRH66386 | Soybean | mitochondrion | 8.06 | 24.29 |
| CDY48240 | Canola | plastid | 31.75 | 24.28 |
| TraesCS6A01G263100.1 | Wheat | mitochondrion, nucleus | 33.18 | 24.22 |
| GSMUA_Achr10P... | Banana | nucleus | 33.18 | 23.97 |
| CDX74671 | Canola | plastid | 31.75 | 23.84 |
| TraesCS2B01G473100.1 | Wheat | cytosol | 31.28 | 23.66 |
| Zm00001d017657_P001 | Maize | nucleus | 31.75 | 23.59 |
| TraesCS2A01G452000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 31.75 | 23.51 |
| Bra004849.1-P | Field mustard | plastid | 31.28 | 23.49 |
| Zm00001d051505_P001 | Maize | nucleus | 32.23 | 23.37 |
| TraesCS2D01G451800.1 | Wheat | nucleus | 31.28 | 23.32 |
| EES12746 | Sorghum | nucleus | 32.7 | 23.31 |
| Bra037642.1-P | Field mustard | nucleus | 27.01 | 23.17 |
| CDY30478 | Canola | nucleus | 27.01 | 23.08 |
| CDY23445 | Canola | nucleus | 26.54 | 22.86 |
| Zm00001d030004_P001 | Maize | mitochondrion, nucleus | 32.23 | 22.82 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 33.18 | 22.73 |
| EES05698 | Sorghum | nucleus | 32.7 | 22.48 |
| PGSC0003DMT400004234 | Potato | nucleus | 33.18 | 22.44 |
| HORVU1Hr1G054570.1 | Barley | nucleus | 28.44 | 22.14 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 28.44 | 22.14 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 28.44 | 22.06 |
| Bra007514.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 28.44 | 21.98 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 31.28 | 21.78 |
| TraesCS1A01G214000.1 | Wheat | mitochondrion, nucleus | 28.91 | 21.71 |
| KRH00975 | Soybean | nucleus | 30.81 | 21.59 |
| AT3G60200.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 30.81 | 21.31 |
| EER91903 | Sorghum | nucleus | 32.7 | 21.3 |
| TraesCS1D01G216900.1 | Wheat | mitochondrion, nucleus | 28.91 | 21.25 |
| Os10t0567600-01 | Rice | plasma membrane | 29.38 | 21.23 |
| CDY64077 | Canola | cytosol | 24.64 | 21.22 |
| KRH48907 | Soybean | nucleus | 27.49 | 21.01 |
| CDX89054 | Canola | cytosol | 28.91 | 20.96 |
| KRH40251 | Soybean | cytosol | 30.81 | 20.9 |
| CDY42673 | Canola | nucleus | 28.44 | 20.76 |
| CDX98409 | Canola | nucleus | 23.7 | 20.75 |
| Bra003403.1-P | Field mustard | cytosol | 24.17 | 20.73 |
| TraesCS1B01G227800.1 | Wheat | nucleus | 27.49 | 20.64 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 29.38 | 19.81 |
| Bra014506.1-P | Field mustard | cytosol | 27.01 | 19.59 |
| HORVU7Hr1G082390.1 | Barley | nucleus | 27.96 | 17.35 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP04760_001 | EnsemblPlants:GSMUA_AchrUn_randomT04760_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG04760_001 | InterPro:UPF0503 | PANTHER:PTHR31659 | PANTHER:PTHR31659:SF7 |
| PFAM:PF05340 | UniParc:UPI0002955E59 | UniProt:M0U6D8 | MapMan:35.2 | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04760_001]
Coordinates
chrchrUn_random:+:18760248..18760883
Molecular Weight (calculated)
23887.4 Da
IEP (calculated)
10.983
GRAVY (calculated)
-0.803
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MKCKRHPFEA GVGVCASCLR ERLLAITAPA QAASSPEHPS PLPFQFPRSV SPYASRRYSS VVSALFGCHG PGDRDRTPQK SRSWLSALLR GRRKKNMSSV
101: YSPEDAAAWP GRDPEPEFRY DAKSPCRSWH RKRPPMREPT GEHNHRDRDD LTRFATCFSP LMIASYSRRR SRMEEIGFSE LGPHHRRRAS TGGPLLYADP
201: PRKLAAFVTV R
101: YSPEDAAAWP GRDPEPEFRY DAKSPCRSWH RKRPPMREPT GEHNHRDRDD LTRFATCFSP LMIASYSRRR SRMEEIGFSE LGPHHRRRAS TGGPLLYADP
201: PRKLAAFVTV R
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.