Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P04810_001 | Banana | nucleus | 45.18 | 46.1 |
| GSMUA_Achr10P... | Banana | nucleus | 42.52 | 43.84 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 27.24 | 38.86 |
| KRH66386 | Soybean | mitochondrion | 8.31 | 35.71 |
| KRH48907 | Soybean | nucleus | 29.9 | 32.61 |
| CDY41187 | Canola | cytosol, mitochondrion, nucleus, plastid | 28.9 | 31.99 |
| KRH00975 | Soybean | nucleus | 31.89 | 31.89 |
| Bra007514.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 28.57 | 31.5 |
| CDX71830 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.91 | 31.0 |
| PGSC0003DMT400004234 | Potato | nucleus | 31.89 | 30.77 |
| VIT_15s0021g00520.t01 | Wine grape | nucleus | 30.9 | 30.69 |
| KRH40251 | Soybean | cytosol | 31.56 | 30.55 |
| Solyc01g088530.2.1 | Tomato | mitochondrion, nucleus | 31.23 | 30.52 |
| CDY23445 | Canola | nucleus | 24.58 | 30.2 |
| CDY30478 | Canola | nucleus | 24.58 | 29.96 |
| CDX74671 | Canola | plastid | 27.24 | 29.18 |
| Bra004849.1-P | Field mustard | plastid | 27.24 | 29.18 |
| CDY48240 | Canola | plastid | 26.58 | 28.99 |
| Bra037642.1-P | Field mustard | nucleus | 23.59 | 28.86 |
| CDY42673 | Canola | nucleus | 27.24 | 28.37 |
| Bra014506.1-P | Field mustard | cytosol | 26.91 | 27.84 |
| CDX89054 | Canola | cytosol | 26.58 | 27.49 |
| AT3G60200.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 27.24 | 26.89 |
| CDX98409 | Canola | nucleus | 20.6 | 25.73 |
| CDY64077 | Canola | cytosol | 20.6 | 25.31 |
| AT2G44600.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 26.25 | 25.24 |
| Bra003403.1-P | Field mustard | cytosol | 20.6 | 25.2 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P27500_001 | EnsemblPlants:GSMUA_Achr3T27500_001 | EnsemblPlantsGene:GSMUA_Achr3G27500_001 | InterPro:UPF0503 | PANTHER:PTHR35486 | PFAM:PF05340 |
| SEG:seg | UniParc:UPI00029623B5 | UniProt:M0SIB6 | MapMan:35.2 | : | : |
Description
transposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G27500_001]
Coordinates
chr3:-:27047056..27047961
Molecular Weight (calculated)
32979.0 Da
IEP (calculated)
10.905
GRAVY (calculated)
-0.670
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MKCKKHPYEL GAGVCASCLR ERLLTLVAAQ DGLAPRDYHY RNHRRTFDAP PAPPAPPVAF PRSVSPYLPP RRSAGSSASH HCDRRFFSTP QLGPTFGGEV
101: DGGPSRSYGR FSVLKALFGH HRQEKVEVDW GYCEGSGSRS WFSALVPGIR RKKKQPQVSS AAEGEALPEQ TRRSCRVVGR GMSPAMEEEE VDEIGYSSES
201: SNGWRRPTPT PLRRISANTR SRHHHPRGLG GVSSFAVCLS PLMRVGPGGR HSHVAEPAAV SSELWGPASS VRRHRRATAA GAPRGLDPCR SRKLADFARF
301: N
101: DGGPSRSYGR FSVLKALFGH HRQEKVEVDW GYCEGSGSRS WFSALVPGIR RKKKQPQVSS AAEGEALPEQ TRRSCRVVGR GMSPAMEEEE VDEIGYSSES
201: SNGWRRPTPT PLRRISANTR SRHHHPRGLG GVSSFAVCLS PLMRVGPGGR HSHVAEPAAV SSELWGPASS VRRHRRATAA GAPRGLDPCR SRKLADFARF
301: N
001: MRCKRHTVDF SSSIGVCASC LRERLFTLAV STAASENDDN DHRHSRISPP PLLFPRSVSP YVAPRKSDAG TGTGAGGRDS VASSNNRFFA TPQVVVQSSS
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
101: SEKVFESDRS FKKKKSGLSR FSSFFRTRSD DYDSRRDSCD ASTVFSQPSS ATTSRSWFSK VISVRSKKQS TTNTCYIEDL IASESDHHHH NQNRPRQRYC
201: RGMSPAGDST TNDESVEESP GRLRRTPVMG TPGRKKTATI GIGRSVSGMA FCLSPLVRAK PNCSSNWKAK FPPDFGYSGE LKSPAKPHLS TAASFCGNRS
301: KKLVDLGRVD HRR
Arabidopsis Description
At2g44600/F16B22.9 [Source:UniProtKB/TrEMBL;Acc:O80500]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.